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Report for CCDS89815.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89815.1 Public Mus musculus 4 Rnf220 23 108 98 CCDS HistoryNCBI Gene:66743Re-query CCDS DB by CCDS ID:89815.1Re-query CCDS DB by GeneID:66743See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89815.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000221654.1 ENSMUSP00000152367.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221654.1Link to Ensembl Protein Viewer:ENSMUSP00000152367.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221654Re-query CCDS DB by Protein ID:ENSMUSP00000152367
Original member Current member NCBI NM_001310730.1 NP_001297659.1 Accepted alive Link to Nucleotide Sequence:NM_001310730.1Link to Protein Sequence:NP_001297659.1Re-query CCDS DB by Nucleotide ID:NM_001310730Re-query CCDS DB by Protein ID:NP_001297659Link to BLAST:NP_001297659.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297659.1 308 Q6PDX6-2 308 100% 0 0

Chromosomal Locations for CCDS 89815.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117272304 117272375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117273053 117273127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117273247 117273355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117277371 117277449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117277582 117277637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117277743 117277829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117278007 117278103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117285379 117285511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117285851 117285972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117289026 117289068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117289203 117289256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGCCGAGGGCCCGGAGCGGCCGGCGGAGCAGGGGGGCCGACGGGAGGGAGGAAACCTTCCTGCGAGTGC
GAGCCAACCGGCAAACCCGACTGAATGCTCGGATTGGGAAAATGAAACGGAGGAAGCAAGATGAAGGGCA
GGTATGTCCCCTGTGCAGCCGCCCCCTGGCAGGATCGGAGCAGGAGATGAGTAGGCATGTGGAGCACTGC
CTGGCTAAGAGGGAAGGCTCCTGCATGGCTGAAGATGATGCTGTGGACATCGAGCATGCGGACAGCAACC
GCTTTGAGGAATATGAGTGGTGTGGGCAGAAGCGGATACGGGCCACCACACTCCTGGAAGGTGGCTTCCG
AGGCTCCGGCTTCGTCATGTGCAGTGGCAAAGAGAACCCAGACAGTGACGCTGACCTGGATGTGGATGGA
GATGACACACTGGAGTATGGGAAACCACAATACACGGAGGCTGATGTCATCCCGTGCACAGGAGAAGAGC
CTGGTGAAGCCAAGGAGAGAGAGGCACTCCGGGGCGCAGTCCTAAATGGTGGCCCTCCGAGCACCCGCAT
CACACCTGAGTTCTCTAAATGGGCCAGTGATGAGATGCCATCCACCAGCAATGGTGAAGGCAGCAAGCAG
GAGGCCATGCAGAAGACCTGCAAGAACAGCGACATTGAGAAAATCACCGAAGAGTCAGCTGTAACTACAT
TTGAGGCTCTGAAGGCTCGGGTCCGGGAGCTTGAACGGCAGCTATCTCGGGGGGACCGATACAAATGCCT
CATCTGCATGGACTCTTACTCGATGCCTCTGACGTCGATCCAGTGTTGGCATGTGCACTGTGAAGAGTGT
TGGCTGCGGACTCTGGGTGCCAAGAAGCTCTGCCCTCAGTGCAACACCATCACAGCCCCCGGAGACCTGC
GGAGGATCTACTTATGA

Translation (308 aa):
MPRARSGRRSRGADGREETFLRVRANRQTRLNARIGKMKRRKQDEGQVCPLCSRPLAGSEQEMSRHVEHC
LAKREGSCMAEDDAVDIEHADSNRFEEYEWCGQKRIRATTLLEGGFRGSGFVMCSGKENPDSDADLDVDG
DDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGEGSKQ
EAMQKTCKNSDIEKITEESAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEEC
WLRTLGAKKLCPQCNTITAPGDLRRIYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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