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Report for CCDS90012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90012.1 Public Mus musculus 5 Zfp853 23 108 98 CCDS HistoryNCBI Gene:330230Re-query CCDS DB by CCDS ID:90012.1Re-query CCDS DB by GeneID:330230See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90012.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212355.1 ENSMUSP00000148683.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212355.1Link to Ensembl Protein Viewer:ENSMUSP00000148683.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212355Re-query CCDS DB by Protein ID:ENSMUSP00000148683
Original member Current member NCBI NM_001370826.1 NP_001357755.1 Accepted alive Link to Nucleotide Sequence:NM_001370826.1Link to Protein Sequence:NP_001357755.1Re-query CCDS DB by Nucleotide ID:NM_001370826Re-query CCDS DB by Protein ID:NP_001357755Link to BLAST:NP_001357755.1

Chromosomal Locations for CCDS 90012.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143287707 143289778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143292227 143292344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143292853 143292864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGCTGTTCCAGCCTGCTCCGGGAGACCCTGGTGTGACCGCCAGGATGGAGCTGGGCCCAGCAACCCAGA
CCTTTGTGTTGGAGCTTCGATGTCTTGAGGATGGGGGTCCAGGGCCTGACACCCTCTCAGGTGGCAGTGG
TGGGAAGGAAAGCCAGGAGGAAGAAGAGGTCCAGGAGGGGAGCAGCCACCCACAGCAGCCAGTGCTTGCA
GCCTCATTCGGGGCCTATTACTATATTGAGCCAGAGCAGGAGGAACCGCAGGACTTGCGAGTGCACCGAG
TTAAGCAGCAGCCAGAGCAGAAACGTCAGCCCGAGCACAGGCAGTTGCAAGAGCAGCAACCGCAGCATCA
GCTGTTAGGATCCCAGCCAGAATCGCAGCAGCAGCAGCAAGATGGACAACAGCAGCTGTCTCCGCCCCAG
CAAGAACAGCAGGAAAACTGGCCCATGCAGCACCAGCAACCAAAACCACAGCTGCAGGTGGTGCAGCTGC
CAAGACTTGGACAAGAGCAACATTTATTGCTGCAGCAGCACCAGATGATGCAGCTTCCACACCAAGCACA
ACAGATGTTTCAACAGCAGCAGGAACAGCTGCAACTGCAGCAAATTCAACAGCAGTATCTTGTGCAGCAG
CAAGTATATGAACCTGTACCGCAGCAGCAAGTGCTGCTACTGCAGCAGCTGGTACAGCAGCAGCAAGTGC
AGGAACAACTGCCATTACAGCAGCCAACGCAAGAGCAGCAACAGTCACAGCACCCACAGCTTCTCCAAAA
GCAACTGTTACAACAGCAGAGACAGTTGCTGCTGCAGCATGTGCAAGATCAAGTATTGCAGTTACAACAA
GTGCAAGAGCAGAAGCTGTTGCAACAGGAGCAGTTTCAGCAGCAGCTGCTCCAACAGCAGCAACTGCTGC
AGCAGCAGGGACAGTTGCAACAGCAACACTTACAGCAGCAGGTACTGGTGCTGCAGCCACAGGGACAGCT
ACAGCAGCAACTATTGCTGCAGCAGCAACAGACACAGTTGCAGCAGCAGCTGTTGCTGCAGCAACAGGCA
CAATTGCAGCACCAACTATTACTGCAGCAGCAGGAACAGTTGCAGCAGCAGTTATTGCAACAGCAGCAGG
AACAGTTGCAGCAGCAGCAGTTATTGCAAAAGCAGCAGGAACAGCTACAGCAGCACCAGCAGCTGCAGCC
TCTTCCACCAGAGGACGAGGAAGTGGAACTTGAGCTCATGCCGGTGGACGTGGGGTCTGAGCAGGAGCTG
GAGAGGCAGCAAGAGCTGGAAAGACTGCAGGAACAGCGGCAGCTGCAGCTAAAAATGCAGGAGCAGCTAC
GTCAGCTAGAGCAGCACCTGGAGAAGCAGCAGCAGCTGGAGCAGCTGCAGCAGCAGCAGCAGCTGGAGCA
ACAGGAGGTGCACCTGGAGCTGACCCCGGTGGAGCTAGGCGCCCAGCAGCAGGAGCTGCAACTGGAGCTG
ACCTCTGTGCAGCCAGAGCTGCAACTAGAGGTGGTGCCAGCTCCGGGAGGTTCAGCGCCAGCTCCAGCCA
CCGTTGTGGTGGCCCCTCCAGGTTACGTGGTGCTGCAAGAGCTCATGGTGCTGCCCGCTGTGGCCACATC
CACTGTGGTAGCTATCCCGGGCCCCGCGGGGAGTGCGGCTCTGACTCCCGCCAAACAGCGGAGGAAGCGG
CGAGCCCGGGACAGGCCGACCATCTGCAGCGAGTGTGGCAAGGGTTTCAGCCGCAGCACGGACCTGGTGC
GACACCAAGCCACACACACTGGGGAGAGGCCGTACCTCTGCAGTGAGTGCGGCAAGAGCTTCTCACAACA
TTCCAACCTGGTGACCCACCAGCGCATCCACACGGGCGAGAAGCCCTATGCCTGCACCTACTGCTCCAAG
TGCTTCAGCGAGAGCTCGGCGCTCGTGCAGCATCAGCGCACCCACACCGGAGAGCGGCCCTACGTCTGCG
GTGACTGCGGCAAGCGCTTCAGCGTCTCCTCCAACCTGCTGCGCCACCGTCGCACCCACTCGGGAGAGCG
GCCCTACGTGTGCGAGGACTGCGGCGAGCGCTTCCGGCACAAGGTGCAGATCCGCAGGCACGAGCGCCAG
CTGCATGGGGCAGGACGCTCCCGAGGCCTGGGACTCCTGCGGTCCTCCAGGCCCGGGCCTTCTACAAGGG
CCCAGCAGAACTCTGCATCCGGGAAGCACTGA

Translation (733 aa):
MLFQPAPGDPGVTARMELGPATQTFVLELRCLEDGGPGPDTLSGGSGGKESQEEEEVQEGSSHPQQPVLA
ASFGAYYYIEPEQEEPQDLRVHRVKQQPEQKRQPEHRQLQEQQPQHQLLGSQPESQQQQQDGQQQLSPPQ
QEQQENWPMQHQQPKPQLQVVQLPRLGQEQHLLLQQHQMMQLPHQAQQMFQQQQEQLQLQQIQQQYLVQQ
QVYEPVPQQQVLLLQQLVQQQQVQEQLPLQQPTQEQQQSQHPQLLQKQLLQQQRQLLLQHVQDQVLQLQQ
VQEQKLLQQEQFQQQLLQQQQLLQQQGQLQQQHLQQQVLVLQPQGQLQQQLLLQQQQTQLQQQLLLQQQA
QLQHQLLLQQQEQLQQQLLQQQQEQLQQQQLLQKQQEQLQQHQQLQPLPPEDEEVELELMPVDVGSEQEL
ERQQELERLQEQRQLQLKMQEQLRQLEQHLEKQQQLEQLQQQQQLEQQEVHLELTPVELGAQQQELQLEL
TSVQPELQLEVVPAPGGSAPAPATVVVAPPGYVVLQELMVLPAVATSTVVAIPGPAGSAALTPAKQRRKR
RARDRPTICSECGKGFSRSTDLVRHQATHTGERPYLCSECGKSFSQHSNLVTHQRIHTGEKPYACTYCSK
CFSESSALVQHQRTHTGERPYVCGDCGKRFSVSSNLLRHRRTHSGERPYVCEDCGERFRHKVQIRRHERQ
LHGAGRSRGLGLLRSSRPGPSTRAQQNSASGKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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