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Report for CCDS90280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90280.1 Public Mus musculus 7 Fam168a 23 108 98 CCDS HistoryNCBI Gene:319604Re-query CCDS DB by CCDS ID:90280.1Re-query CCDS DB by GeneID:319604See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90280.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107042.8 ENSMUSP00000102657.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107042.8Link to Ensembl Protein Viewer:ENSMUSP00000102657.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107042Re-query CCDS DB by Protein ID:ENSMUSP00000102657
Original member Current member NCBI NM_001362169.1 NP_001349098.1 Accepted alive Link to Nucleotide Sequence:NM_001362169.1Link to Protein Sequence:NP_001349098.1Re-query CCDS DB by Nucleotide ID:NM_001362169Re-query CCDS DB by Protein ID:NP_001349098Link to BLAST:NP_001349098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349098.1 244 Q8BGZ2-1 244 100% 0 0

Chromosomal Locations for CCDS 90280.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100786822 100786891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100812920 100813000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100818736 100818762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100824132 100824257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100831328 100831470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100834009 100834183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100835327 100835439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGAACCCTGTTTATAGCCCCGTGCAACCTGGGGCTCCTTATGGCAACCCTAAGAACATGGCCTACACTG
GTTACCCCACAGCATACCCGGCAGCTGCTCCTGCCTACAACCCCAGCCTGTACCCGACCAACAGCCCTAG
TTATGCTCCAGAGTTTCAGTTCCTGCATTCAGCTTATGCCACTCTGCTGATGAAACAAGCCTGGCCACAG
AACTCGTCTTCCTGTGGCACTGAAGGCACCTTCCACCTCCCAGTGGACACCGGGACCGAGAACCGAACTT
ACCAGGCATCCTCTGCGGCTTTCAGATATACCGCAGGGACACCATACAAGGTCCCACCGACCCAGAGTAA
TACTGCTCCACCCCCCTACTCCCCATCACCCAATCCCTATCAGACGGCCATGTATCCAATCAGAAGTGCC
TATCCCCAGCAGAATCTGTATGCCCAGGGAGCCTACTACACACAACCTGTGTATGCTGCCCAGCCCCATG
TCATCCACCACACCACGGTTGTCCAGCCCAACAGCATTCCCTCTGCCATCTACCCAGCTCCTGTTGCTGC
CCCCAGGACCAATGGTGTGGCCATGGGCATGGTGGCAGGCACCACCATGGCAATGTCAGCAGGTACCCTG
CTGACCACACCCCAGCACACTGCAATTGGGGCACACCCTGTCTCCATGCCCACATACAGGGCCCAAGGAA
CCCCTGCGTACAGCTACGTGCCCCCGCACTGGTAA

Translation (244 aa):
MNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAYATLLMKQAWPQ
NSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAPPPYSPSPNPYQTAMYPIRSA
YPQQNLYAQGAYYTQPVYAAQPHVIHHTTVVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTL
LTTPQHTAIGAHPVSMPTYRAQGTPAYSYVPPHW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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