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Report for CCDS90336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90336.1 Public Mus musculus 7 Itgax 23 108 98 CCDS HistoryNCBI Gene:16411Re-query CCDS DB by CCDS ID:90336.1Re-query CCDS DB by GeneID:16411See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000205460.1 ENSMUSP00000145587.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205460.1Link to Ensembl Protein Viewer:ENSMUSP00000145587.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205460Re-query CCDS DB by Protein ID:ENSMUSP00000145587
Original member Current member NCBI NM_001363985.1 NP_001350914.1 Accepted alive Link to Nucleotide Sequence:NM_001363985.1Link to Protein Sequence:NP_001350914.1Re-query CCDS DB by Nucleotide ID:NM_001363985Re-query CCDS DB by Protein ID:NP_001350914Link to BLAST:NP_001350914.1

Chromosomal Locations for CCDS 90336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128129620 128129656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128130279 128130384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128130817 128130920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128131209 128131279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128131430 128131544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128133007 128133137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128133268 128133413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128133666 128133729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGAGCTGTACCTGGATAGCCTTTCTTCTGCTGTTGGGGTTTGTTTCTTGTCTTGGCTTCAACTTGGATG
CAGAGAAGCTGACACATTTTCACATGGACGGTGCTGAGTTCGGACACAGTGTGCTCCAGTATGATAGTTC
CTGGGTGGTGGTTGGAGCACCAAAGGAAATAAAAGCCACTAACCAAATAGGTGGCCTCTACAAATGTGGC
TATCACACAGGCAACTGTGAGCCCATCTCCCTCCAGGTGCCCCCAGAGGCTGTGAACATATCCCTGGGCC
TGTCCCTTGCTGCTGCCACCAACCCTTCCTGGCTGTTGGCTTGTGGTCCTACTGTGCACCACACATGCAG
AGAGAATATATACTTGACAGGGCTCTGCTTTCTACTGAGTTCATCATTCAAGCAGAGCCAGAACTTCCCA
ACTGCACAGCAGGAGTGTCCAAAGCAAGACCAAGACATCGTGTTCCTGATTGATGGCTCGGGTAGCATCA
GTTCCACAGATTTTGAAAAAATGCTGGACTTTGTTAAAGCTGTGATGAGCCAGCTTCAGAGACCTAGCAC
ACGGTTCTCCCTGATGCAGTTCTCTGATTACTTCCGAGTACATTTTACTTTCAACAACTTCATCTCCACG
TCAAGCCCTTTAAGTCTGTTGGGTTCTGTAAGGCAGCTAAGAGGGTACACATACACAGCCTCGGCTATCA
AGCATGTCATAACTGTTCACCACCCAAAGTGGAGCTCGGCAAGATGCCACCAAGGTCCTCATTGTCATCA
CTGA

Translation (257 aa):
MSCTWIAFLLLLGFVSCLGFNLDAEKLTHFHMDGAEFGHSVLQYDSSWVVVGAPKEIKATNQIGGLYKCG
YHTGNCEPISLQVPPEAVNISLGLSLAAATNPSWLLACGPTVHHTCRENIYLTGLCFLLSSSFKQSQNFP
TAQQECPKQDQDIVFLIDGSGSISSTDFEKMLDFVKAVMSQLQRPSTRFSLMQFSDYFRVHFTFNNFIST
SSPLSLLGSVRQLRGYTYTASAIKHVITVHHPKWSSARCHQGPHCHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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