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Report for CCDS90382.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90382.1 Public Mus musculus 8 Nrg1 23 108 98 CCDS HistoryNCBI Gene:211323Re-query CCDS DB by CCDS ID:90382.1Re-query CCDS DB by GeneID:211323See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90382.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238812.1 ENSMUSP00000159096.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238812.1Link to Ensembl Protein Viewer:ENSMUSP00000159096.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238812Re-query CCDS DB by Protein ID:ENSMUSP00000159096
Original member Current member NCBI NM_001364431.1 NP_001351360.1 Accepted alive Link to Nucleotide Sequence:NM_001364431.1Link to Protein Sequence:NP_001351360.1Re-query CCDS DB by Nucleotide ID:NM_001364431Re-query CCDS DB by Protein ID:NP_001351360Link to BLAST:NP_001351360.1

Chromosomal Locations for CCDS 90382.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 31837635 31837728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31849310 31849439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31917537 31918203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGAGATTTATCCCCCAGACATGTCTGAGGGAGCTGGCGGGAGGTCCTCCAGCCCCTCCACTCAGCTGA
GTGCAGACCCATCTCTCGATGGGCTTCCGGCAGCGGAACATATGCCAGACACCCACACAGAAGATGGGAG
AAGCCCTGGACTCCTGGGCCTGGCCGTGCCCTGCTGTGTCTGCCTGGAAGCGGAGCGTCTCAGAGGGTGC
CTCAACTCCGAGAAGATCTGCATTGTTCCCATTCTGGCTTGTCTAGTAAGCCTCTGCCTCTGCATTGCTG
GCCTAAAGTGGGTATTTGTGGACAAGATATTCGAATACGACTCTCCTACCCACCTTGACCCTGGGGGGTT
AGGCCAGGACCCTGTTATTTCTCTGGATCCAACGGCTGCCTCCGCTGTTCTGGTCTCATCCGAGGCATAC
ACTTCACCTGTCTCTAAGGCTCAGTCTGAAGCCGAGGCTCATGTTACAGGGCAAGGTGACCATGTCGCTG
TGGCCTCTGAACCTTCCGCAGTACCCACCCGGAAGAACCGGCTGTCTGCTTTTCCTCCCTTACACTCCAC
TCCACCGCCCTTCCCTTCTCCAGCTCGGACCCCTGAGGTGAGAACACCCAAGTCAGGAACTCAGCCACAA
ACAACAGAAACTAATCTGCAAACTGCTCCTAAACTTTCCACATCTACATCCACGACTGGGACCAGCCATC
TCATAAAGTGTGCGGAGAAGGAGAAAACTTTCTGTGTGAATGGAGGCGAGTGCTTCATGGTGAAGGACCT
GTCAAACCCCTCAAGATACTTGTGCAAGTGCCCAAATGAGTTTACTGGTGATCGTTGCCAAAACTACGTA
ATGGCCAGCTTCTACAGTACGTCCACTCCCTTTCTGTCTCTGCCTGAATAG

Translation (296 aa):
MEIYPPDMSEGAGGRSSSPSTQLSADPSLDGLPAAEHMPDTHTEDGRSPGLLGLAVPCCVCLEAERLRGC
LNSEKICIVPILACLVSLCLCIAGLKWVFVDKIFEYDSPTHLDPGGLGQDPVISLDPTAASAVLVSSEAY
TSPVSKAQSEAEAHVTGQGDHVAVASEPSAVPTRKNRLSAFPPLHSTPPPFPSPARTPEVRTPKSGTQPQ
TTETNLQTAPKLSTSTSTTGTSHLIKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYV
MASFYSTSTPFLSLPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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