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Report for CCDS90503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90503.1 Public Mus musculus 9 Slc36a4 23 108 98 CCDS HistoryNCBI Gene:234967Re-query CCDS DB by CCDS ID:90503.1Re-query CCDS DB by GeneID:234967See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90503.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115588.7 ENSMUSP00000111251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115588.7Link to Ensembl Protein Viewer:ENSMUSP00000111251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115588Re-query CCDS DB by Protein ID:ENSMUSP00000111251
Original member Current member NCBI NM_001357565.1 NP_001344494.1 Accepted alive Link to Nucleotide Sequence:NM_001357565.1Link to Protein Sequence:NP_001344494.1Re-query CCDS DB by Nucleotide ID:NM_001357565Re-query CCDS DB by Protein ID:NP_001344494Link to BLAST:NP_001344494.1

Chromosomal Locations for CCDS 90503.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 15709792 15709837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15719633 15719756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15720700 15720790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15721933 15722021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15723514 15723609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15724521 15724605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15726811 15727038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15728701 15728799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15734137 15734306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15736872 15737028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15738074 15738103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGAAGCGCCGGCGCCGGCGGAGACGGCGGGATGCGAGGAGCTCGATATGGACGTGATGAGGCCCTTAA
TAAACGAGCAGAATTTCGATGGGTCGTCCGACGAGGAGCAGGAACAGACGCTTGTGCCCATACAGAAGCA
CTACCAGCTCGATGGGCAGCACGGGATTTCGTTCCTGCAGACCTTGGTGCATCTTCTCAAGGGGAACATC
GGGACTGGCCTTTTAGGGCTCCCCTTGGCTATAAAGAACGCGGGCATCGTGCTTGGACCAATCAGCCTTG
TGTTTATAGGAATTATTTCCGTCCACTGTATGCACATATTGGTACGTTGCAGTCACTTTCTATGTCAGAG
GTTTAAGAAGTCAACATTGGGGTACAGTGACACCGTGAGTTTTGCCATGGAGGCTAGTCCGTGGAGTTGC
CTTCAGCGACAGGCAGCATGGGGGCGGAGCGTGGTCGACTTCTTTCTGGTGATAACACAGCTGGGATTCT
GCAGCGTCTACATTGTCTTCTTAGCTGAGAATGTGAAACAGGTTCATGAAGGATTCCTGGGGAGCACGCC
GATTGTTTCAAATGGCTCGGACCTGTCTCATGCCTGTGAGAGAAGAAGTGTGGACCTCAGGGTCTATATG
CTCTGCTTTCTCCCACTTATAATTCTCTTGGTCTTCATTCGCGAGCTGAAGAATCTCTTTGTACTTTCAT
TCCTTGCCAACATTTCCATGGCTGCCAGTCTTGTGATAATTTACCAGTATGTTGTTAGGAACATGCCAGA
TCCCCACAACCTTCCAATAGTGGCCGGCTGGAAGAAATACCCACTGTTTTTTGGCACTGCTGTGTTTGCT
TTTGAAGGCATAGGAGTGGTGCTACCACTGGAAAACCAAATGAGAGAGTCCAAACGCTTCCCTCAGGCAT
TGAACATCGGCATGGCCATCGTCACCGTGCTGTACATCAGCCTAGCCACTTTAGGCTACATGTGTTTCCG
TGACGAGATCAAAGGCAGCATTACACTGAATCTTCCCCAGGACATGTGGTTGTATCAGTCAGTGAAAATT
CTGTATTCCTTTGGCATTTTTGTGACCTATTCAATTCAGTTCTATGTCCCAGCAGAGATCATTATCCCTG
GAGTCACTGCTAGACTTCATGCCAAATGGAAGCGCATTTGTGAATTTGGGATACGGTCCCTCTTGGTGCT
GGGGCGATTCTCATTCCTCGCCTAG

Translation (404 aa):
MEAPAPAETAGCEELDMDVMRPLINEQNFDGSSDEEQEQTLVPIQKHYQLDGQHGISFLQTLVHLLKGNI
GTGLLGLPLAIKNAGIVLGPISLVFIGIISVHCMHILVRCSHFLCQRFKKSTLGYSDTVSFAMEASPWSC
LQRQAAWGRSVVDFFLVITQLGFCSVYIVFLAENVKQVHEGFLGSTPIVSNGSDLSHACERRSVDLRVYM
LCFLPLIILLVFIRELKNLFVLSFLANISMAASLVIIYQYVVRNMPDPHNLPIVAGWKKYPLFFGTAVFA
FEGIGVVLPLENQMRESKRFPQALNIGMAIVTVLYISLATLGYMCFRDEIKGSITLNLPQDMWLYQSVKI
LYSFGIFVTYSIQFYVPAEIIIPGVTARLHAKWKRICEFGIRSLLVLGRFSFLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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