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Report for CCDS90944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90944.1 Public Homo sapiens 1 ATPAF1 24 110 108 CCDS HistoryNCBI Gene:64756Re-query CCDS DB by CCDS ID:90944.1Re-query CCDS DB by GeneID:64756See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90944.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000574428.6 ENSP00000459167.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000574428.6Link to Ensembl Protein Viewer:ENSP00000459167.2Re-query CCDS DB by Nucleotide ID:ENST00000574428Re-query CCDS DB by Protein ID:ENSP00000459167
Original member Current member NCBI NM_001394565.1 NP_001381494.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394565.1Link to Protein Sequence:NP_001381494.1Re-query CCDS DB by Nucleotide ID:NM_001394565Re-query CCDS DB by Protein ID:NP_001381494Link to BLAST:NP_001381494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381494.1 328 Q5TC12-1 328 100% 0 0

Chromosomal Locations for CCDS 90944.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 46635776 46635970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46643194 46643301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46645161 46645256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46652581 46652628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46653817 46653867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46658127 46658189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46658687 46658737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46665256 46665364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46668057 46668322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGCTGCTGTGGTGGTGGCGGCTGCGGGTGGCGCGGGACCGGCGGTCCTGCAGGTGGCCGGTCTCTACC
GGGGCCTGTGCGCGGTGCGCAGCCGCGCCCTGGGCCTGGGGCTCGTGTCACCCGCGCAGCTGCGCGTCTT
CCCAGTGCGCCCCGGCTCGGGCCGGCCCGAGGGGGGCGCCGACAGCAGCGGGGTCGGGGCCGAGGCCGAG
CTCCAGGCCAACCCTTTCTACGACCGCTACCGCGACAAGATCCAGCTGCTGCGCAGGTCAGACCCAGCTG
CTTTTGAGTCCCGCCTGGAGAAACGCAGTGAATTTCGGAAGCAGCCAGTGGGGCATTCCAGGCAAGGTGA
TTTTATCAAATGTGTGGAACAGAAGACAGATGCCTTGGGGAAACAGTCTGTGAACAGAGGATTCACTAAG
GACAAGACTCTCAGTTCAATCTTTAACATTGAGATGGTAAAAGAAAAAACTGCAGAAGAAATAAAACAGA
TTTGGCAGCAATATTTTGCAGCAAAAGATACAGTCTACGCAGTTATTCCTGCAGAAAAGTTTGATTTGAT
CTGGAACCGGGCTCAGTCCTGTCCAACATTTCTATGTGCTCTGCCAAGAAGGGAAGGTTATGAGTTTTTT
GTAGGACAATGGACAGGTACTGAACTCCACTTCACTGCACTTATAAATATTCAGACCCGAGGGGAAGCTG
CAGCCAGCCAGCTGATTTTATATCACTATCCTGAACTTAAGGAAGAAAAGGGCATAGTGCTGATGACTGC
AGAAATGGATTCCACATTTCTGAATGTTGCTGAGGCACAGTGCATCGCCAACCAAGTTCAGCTCTTCTAC
GCTACTGATCGGAAAGAGACCTACGGGTTAGTGGAGACCTTTAACCTCAGACCAAATGAGTTCAAATATA
TGTCTGTCATCGCTGAATTGGAGCAAAGCGGACTTGGAGCAGAACTGAAATGTGCCCAGAACCAAAATAA
GACTTAG

Translation (328 aa):
MAAVVVAAAGGAGPAVLQVAGLYRGLCAVRSRALGLGLVSPAQLRVFPVRPGSGRPEGGADSSGVGAEAE
LQANPFYDRYRDKIQLLRRSDPAAFESRLEKRSEFRKQPVGHSRQGDFIKCVEQKTDALGKQSVNRGFTK
DKTLSSIFNIEMVKEKTAEEIKQIWQQYFAAKDTVYAVIPAEKFDLIWNRAQSCPTFLCALPRREGYEFF
VGQWTGTELHFTALINIQTRGEAAASQLILYHYPELKEEKGIVLMTAEMDSTFLNVAEAQCIANQVQLFY
ATDRKETYGLVETFNLRPNEFKYMSVIAELEQSGLGAELKCAQNQNKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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