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Report for CCDS92004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92004.1 Public Homo sapiens 15 RFX7 24 110 108 CCDS HistoryNCBI Gene:64864Re-query CCDS DB by CCDS ID:92004.1Re-query CCDS DB by GeneID:64864See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92004.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000673948.1 ENSP00000501249.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673948.1Link to Ensembl Protein Viewer:ENSP00000501249.1Re-query CCDS DB by Nucleotide ID:ENST00000673948Re-query CCDS DB by Protein ID:ENSP00000501249
Original member Current member NCBI NM_001370554.1 NP_001357483.1 Accepted alive Link to Nucleotide Sequence:NM_001370554.1Link to Protein Sequence:NP_001357483.1Re-query CCDS DB by Nucleotide ID:NM_001370554Re-query CCDS DB by Protein ID:NP_001357483Link to BLAST:NP_001357483.1

Chromosomal Locations for CCDS 92004.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 56087468 56087509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56093633 56096620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56098081 56098376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56101359 56101566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56102169 56102253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56103554 56103670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 56142778 56142887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3846 nt):
ATGTCATCTAGTCGGGCACAACAAATGCATGCCTTTTCCTGGATTCGGAATACCCTAGAGGAACATCCGG
AGACTTCACTGCCCAAACAGGAAGTCTATGATGAGTACAAGAGCTATTGTGACAATCTTGGTTACCATCC
ATTAAGTGCTGCTGATTTTGGAAAGATCATGAAAAACGTCTTTCCAAACATGAAGGCACGTCGTTTGGGC
ACAAGAGGCAAATCTAAATATTGCTACAGTGGACTAAGAAAAAAAGCTTTTGTTCATATGCCAACACTGC
CCAACCTTGACTTTCACAAAACTGGAGATGGGTTGGAAGGAGCTGAACCTTCTGGGCAGCTTCAAAATAT
TGATGAAGAAGTTATCTCTTCTGCTTGCCGTCTTGTGTGTGAGTGGGCCCAGAAAGTGTTAAGCCAACCA
TTTGACACCGTCTTGGAATTAGCCCGCTTCCTTGTAAAAAGTCACTATATAGGCACCAAGTCAATGGCAG
CTCTAACTGTAATGGCAGCAGCACCAGCAGGAATGAAAGGAATTACCCAGCCTTCTGCTTTTATACCTAC
AGCTGAAAGTAATTCCTTTCAGCCTCAGGTGAAGACTTTGCCATCTCCAATTGATGCTAAACAGCAGTTG
CAACGGAAAATCCAGAAGAAGCAGCAAGAACAGAAACTACAATCCCCTTTGCCAGGAGAATCTGCAGCAA
AAAAGTCAGAAAGTGCTACAAGCAATGGAGTGACTAATCTTCCTAATGGAAATCCTTCAATCCTTTCTCC
TCAACCTATTGGTATCGTTGTGGCAGCTGTCCCTAGTCCCATTCCGGTCCAGCGGACTAGGCAATTGGTA
ACTTCACCGAGTCCAATGAGTTCTTCTGACGGCAAAGTTCTTCCCCTCAATGTACAGGTGGTCACTCAGC
ACATGCAGTCTGTGAAACAGGCACCAAAGACTCCCCAGAACGTTCCAGCCAGTCCTGGTGGGGATCGTTC
TGCCCGGCACCGTTACCCTCAGATCTTACCCAAACCAGCGAACACCAGTGCACTCACCATTCGCTCTCCA
ACTACTGTCCTCTTTACTAGTAGTCCCATCAAAACTGCTGTTGTACCCGCTTCACACATGAGTTCTCTAA
ATGTGGTGAAAATGACAACAATATCCCTCACACCCAGCAACAGTAACACCCCTCTTAAACATTCTGCCTC
AGTCAGCAGTGCTACAGGAACAACAGAAGAATCAAGGAGTGTTCCACAGATCAAGAATGGTTCTGTCGTG
TCGCTTCAGTCTCCTGGGTCCAGGAGCAGCAGTGCGGGGGGAACATCTGCTGTGGAAGTCAAAGTGGAAC
CCGAAACATCATCAGATGAGCATCCTGTACAGTGCCAAGAGAACTCTGATGAGGCTAAAGCTCCCCAGAC
ACCTAGTGCCCTTTTGGGGCAGAAAAGTAATACAGACGGAGCACTGCAGAAACCTTCAAATGAAGGTGTC
ATTGAAATAAAAGCAACTAAGGTCTGTGACCAGAGGACCAAATGTAAAAGTCGCTGTAATGAAATGCTGC
CAGGCACGTCAACAGGCAATAATCAAAGCACTATCACTCTATCAGTTGCTTCTCAGAACTTAACTTTCAC
CAGCAGCAGCTCACCACCTAATGGTGACTCAATCAATAAAGACCCTAAATTATGCACTAAAAGCCCAAGA
AAACGACTGTCTTCTACATTGCAGGAGACCCAGGTGCCTCCTGTAAAGAAACCAATTGTGGAACAGCTTT
CAGCAGCTACCATAGAAGGGCAGAAACAAGGCAGTGTTAAGAAGGACCAAAAGGTTCCACATTCAGGGAA
AACAGAAGGTTCAACAGCAGGTGCTCAGATTCCTAGCAAGGTATCAGTAAATGTCAGTTCACACATAGGA
GCAAATCAACCCTTGAATTCCTCTGCCCTTGTTATCAGTGATTCAGCTTTGGAACAGCAAACAACCCCAT
CATCATCTCCAGATATAAAAGTAAAACTTGAAGGAAGTGTCTTTCTCTTGGACAGTGATTCAAAGTCAGT
TGGCAGCTTTAATCCAAATGGATGGCAACAAATCACTAAAGATTCTGAGTTTATATCTGCCAGTTGTGAA
CAACAGCAAGATATCAGTGTTATGACAATTCCTGAGCACTCTGATATCAATGACTTAGAGAAATCTGTTT
GGGAATTAGAAGGAATGCCACAGGACACATATAGCCAGCAGCTACATAGCCAGATACAGGAATCTTCTTT
AAATCAAATACAAGCACATTCTTCAGATCAGTTACCTCTGCAATCTGAACTGAAGGAGTTTGAGCCTTCT
GTTTCCCAGACAAATGAAAGCTACTTTCCTTTTGATGATGAACTTACACAAGATAGTATTGTGGAAGAGC
TGGTGCTTATGGAGCAGCAAATGTCAATGAACAATTCTCATTCTTACGGCAACTGTTTGGGAATGACCCT
TCAGAGTCAGTCAGTAACTCCAGGAGCTCCAATGTCATCTCACACTTCCAGCACCCACTTCTATCATCCA
ATCCACAGCAATGGCACTCCAATCCACACACCCACACCCACACCCACACCCACTCCTACTCCAACCCCAA
CCCCAACCCCGACATCTGAAATGATTGCTGGATCTCAGAGTCTGTCACGGGAGAGCCCTTGCTCCAGGCT
AGCCCAGACTACACCTGTGGATAGTGCTTTAGGAAGTAGCCGACATACACCCATTGGTACTCCACATTCT
AACTGCAGCAGTAGTGTCCCCCCCAGCCCTGTTGAATGCAGGAATCCGTTTGCATTCACTCCAATAAGCT
CCAGTATGGCATATCATGACGCCAGCATTGTCTCAAGTAGTCCTGTGAAACCGATGCAAAGACCCATGGC
CACACACCCTGACAAAACCAAGCTTGAATGGATGAATAATGGGTATAGTGGGGTTGGTAATTCATCAGTT
TCTGGCCATGGTATTCTCCCAAGCTATCAGGAACTAGTGGAAGACCGTTTCAGGAAACCTCATGCTTTTG
CTGTGCCTGGACAGTCTTATCAGTCTCAATCCAGACATCATGACACTCATTTTGGTCGTTTGACTCCTGT
CTCTCCTGTGCAGCATCAAGGTGCCACTGTAAATAACACCAACAAACAGGAGGGTTTTGCAGTCCCTGCC
CCTCTTGATAATAAAGGAACTAATTCATCTGCCAGCAGCAACTTCAGATGCCGGAGTGTGAGCCCTGCTG
TTCATCGCCAACGTAATCTTAGTGGAAGCACCCTCTATCCAGTATCTAATATCCCACGATCTAATGTGAC
CCCCTTTGGAAGTCCAGTTACCCCAGAAGTTCATGTTTTCACAAATGTTCACACAGACGCATGTGCCAAC
AACATAGCTCAAAGAAGCCAATCAGTTCCATTGACAGTCATGATGCAGACAGCCTTCCCAAACGCTCTTC
AGAAGCAAGCAAACAGTAAAAAAATAACCAATGTTTTGTTGAGTAAACTTGATTCCGACAATGATGATGC
AGTGAGAGGTTTGGGAATGAACAACCTGCCCTCTAATTATACAGCCCGGATGAATCTCACTCAGATTTTG
GAACCTTCCACTGTTTTTCCTAGTGCCAACCCACAAAATATGATCGATTCCAGCACTTCTGTTTATGAGT
TCCAAACACCATCTTACCTCACCAAAAGTAATAGCACCGGTCAGATCAATTTTTCTCCTGGAGATAATCA
AGCACAATCAGAAATTGGAGAGCAACAATTAGATTTCAATAGCACTGTTAAAGACCTGTTGAGTGGAGAC
AGCTTGCAAACCAACCAGCAGCTGTGTTCTTGTCCTTCCTCTCTGCTGGCTGGAATGCAAATGTGA

Translation (1281 aa):
MSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCDNLGYHPLSAADFGKIMKNVFPNMKARRLG
TRGKSKYCYSGLRKKAFVHMPTLPNLDFHKTGDGLEGAEPSGQLQNIDEEVISSACRLVCEWAQKVLSQP
FDTVLELARFLVKSHYIGTKSMAALTVMAAAPAGMKGITQPSAFIPTAESNSFQPQVKTLPSPIDAKQQL
QRKIQKKQQEQKLQSPLPGESAAKKSESATSNGVTNLPNGNPSILSPQPIGIVVAAVPSPIPVQRTRQLV
TSPSPMSSSDGKVLPLNVQVVTQHMQSVKQAPKTPQNVPASPGGDRSARHRYPQILPKPANTSALTIRSP
TTVLFTSSPIKTAVVPASHMSSLNVVKMTTISLTPSNSNTPLKHSASVSSATGTTEESRSVPQIKNGSVV
SLQSPGSRSSSAGGTSAVEVKVEPETSSDEHPVQCQENSDEAKAPQTPSALLGQKSNTDGALQKPSNEGV
IEIKATKVCDQRTKCKSRCNEMLPGTSTGNNQSTITLSVASQNLTFTSSSSPPNGDSINKDPKLCTKSPR
KRLSSTLQETQVPPVKKPIVEQLSAATIEGQKQGSVKKDQKVPHSGKTEGSTAGAQIPSKVSVNVSSHIG
ANQPLNSSALVISDSALEQQTTPSSSPDIKVKLEGSVFLLDSDSKSVGSFNPNGWQQITKDSEFISASCE
QQQDISVMTIPEHSDINDLEKSVWELEGMPQDTYSQQLHSQIQESSLNQIQAHSSDQLPLQSELKEFEPS
VSQTNESYFPFDDELTQDSIVEELVLMEQQMSMNNSHSYGNCLGMTLQSQSVTPGAPMSSHTSSTHFYHP
IHSNGTPIHTPTPTPTPTPTPTPTPTPTSEMIAGSQSLSRESPCSRLAQTTPVDSALGSSRHTPIGTPHS
NCSSSVPPSPVECRNPFAFTPISSSMAYHDASIVSSSPVKPMQRPMATHPDKTKLEWMNNGYSGVGNSSV
SGHGILPSYQELVEDRFRKPHAFAVPGQSYQSQSRHHDTHFGRLTPVSPVQHQGATVNNTNKQEGFAVPA
PLDNKGTNSSASSNFRCRSVSPAVHRQRNLSGSTLYPVSNIPRSNVTPFGSPVTPEVHVFTNVHTDACAN
NIAQRSQSVPLTVMMQTAFPNALQKQANSKKITNVLLSKLDSDNDDAVRGLGMNNLPSNYTARMNLTQIL
EPSTVFPSANPQNMIDSSTSVYEFQTPSYLTKSNSTGQINFSPGDNQAQSEIGEQQLDFNSTVKDLLSGD
SLQTNQQLCSCPSSLLAGMQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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