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Report for CCDS92071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92071.1 Public Homo sapiens 16 RAB11FIP3 24 110 108 CCDS HistoryNCBI Gene:9727Re-query CCDS DB by CCDS ID:92071.1Re-query CCDS DB by GeneID:9727See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 92071.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000434585.6 ENSP00000399644.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434585.6Link to Ensembl Protein Viewer:ENSP00000399644.2Re-query CCDS DB by Nucleotide ID:ENST00000434585Re-query CCDS DB by Protein ID:ENSP00000399644
Original member Current member NCBI NM_001370401.1 NP_001357330.1 Accepted alive Link to Nucleotide Sequence:NM_001370401.1Link to Protein Sequence:NP_001357330.1Re-query CCDS DB by Nucleotide ID:NM_001370401Re-query CCDS DB by Protein ID:NP_001357330Link to BLAST:NP_001357330.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357330.1 801 O75154-3 801 100% 0 0

Chromosomal Locations for CCDS 92071.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 426007 426720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 461404 461497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 471295 471389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 482525 482736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 488851 489000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 491134 491268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 496824 496859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 503004 503097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 505524 505627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 510660 510800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 518943 519024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 519754 519891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 520122 520277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 520459 520599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 520726 520839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGGCGTCGGCCCCGCCGGCCTCGCCCCCGGGCTCGGAGCCGCCGGGGCCCGACCCGGAGCCGGGCGGGC
CGGACGGGCCGGGGGCGGCACAACTGGCTCCGGGCCCTGCGGAGCTACGCCTCGGAGCGCCCGTCGGCGG
CCCCGACCCGCAGTCCCCGGGCCTGGATGAGCCTGCGCCCGGGGCCGCTGCAGATGGCGGGGCGCGTTGG
AGCGCCGGGCCGGCCCCGGGGCTGGAGGGAGGCCCGCGAGACCCCGGGCCGTCCGCCCCGCCGCCGCGCT
CCGGCCCGCGGGGGCAGCTTGCGAGCCCCGACGCCCCGGGCCCAGGGCCGCGCTCCGAAGCGCCGCTTCC
AGAACTCGACCCGTTGTTCTCCTGGACTGAGGAGCCCGAGGAGTGTGGCCCCGCGAGCTGCCCGGAGAGC
GCGCCTTTCCGCTTGCAGGGGTCCAGCAGCAGCCACCGAGCGCGGGGCGAGGTCGACGTCTTCTCTCCCT
TCCCCGCGCCCACGGCGGGCGAGCTGGCGCTGGAGCAAGGTCCCGGGTCCCCGCCGCAGCCCTCGGACCT
CAGCCAGACCCACCCCCTTCCGAGCGAGCCCGTGGGGAGTCAGGAGGACGGCCCCCGCCTCCGAGCCGTG
TTCGATGCCCTGGACGGGGATGGGGACGGTTTCGTCCGCATCGAGGACTTCATCCAGTTTGCTACGGTCT
ACGGGGCAGAGCAGGTGAAGGACTTAACTAAGTACTTGGATCCCAGTGGGCTCGGCGTGATCAGCTTTGA
AGACTTCTACCAAGGGATCACAGCCATCAGAAACGGAGATCCTGATGGCCAGTGCTACGGTGGTGTCGCT
TCTGCCCAAGATGAGGAGCCCCTGGCCTGCCCGGACGAGTTCGATGACTTCGTCACCTATGAGGCCAACG
AGGTGACGGACAGCGCGTACATGGGCTCCGAGAGCACCTACAGTGAGTGTGAGACCTTCACGGACGAGGA
CACCAGCACCCTGGTGCACCCTGAGCTGCAACCTGAAGGGGACGCAGACAGTGCCGGCGGCTCGGCCGTG
CCCTCTGAGTGCCTGGACGCCATGGAGGAGCCCGACCATGGTGCCCTGCTGCTGCTCCCAGGCAGGCCTC
ACCCCCATGGCCAGTCTGTCATCACGGTGATCGGGGGCGAGGAGCACTTTGAGGACTACGGTGAAGGCAG
TGAGGCGGAGCTGTCCCCAGAGACCCTATGCAACGGGCAGCTGGGCTGCAGTGACCCCGCTTTCCTCACG
CCCAGCACTGACCCTCTTGCCGCAAAGCTGCACAGCATCCTCACTGATGAGGCGTTTGAGTTTTACTGTA
GCCAGTGCCACAAACAAATCAACCGCCTTGAGGATCTTTCTGCCCGCCTGAGTGATCTTGAAATGAATAG
TCCGACAAAGCGGCTCTCCAGCAAGAAGGTGGCAAGGTACCTGCACCAGTCAGGGGCCCTGACCATGGAG
GCCCTGGAGGACCCTTCCCCCGAGCTCATGGAGGGCCCAGAGGAGGACATTGCTGACAAGGTTGTCTTCC
TGGAAAGGCGTGTGCTGGAGCTGGAAAAGGACACGGCAGCCACCGGTGAGCAACACAGCCGCCTGAGGCA
GGAGAACCTGCAGCTGGTGCACAGAGCAAACGCCCTGGAGGAGCAGCTGAAGGAGCAGGAGCTGAGAGCC
TGCGAGATGGTCCTGGAAGAGACCCGGCGTCAGAAGGAGCTCCTGTGCAAGATGGAGAGGGAGAAGAGCA
TTGAGATCGAGAACCTGCAGACCAGGCTACAGCAACTGGACGAGGAGAACAGTGAACTCCGGTCCTGCAC
GCCCTGTCTGAAGGCCAACATTGAGCGTCTGGAGGAGGAGAAGCAGAAGCTGTTGGATGAGATAGAGTCG
CTGACGCTGCGGCTCAGTGAAGAGCAGGAGAACAAGAGGAGAATGGGGGACAGGCTGAGTCACGAGAGGC
ACCAGTTCCAGAGGGACAAGGAGGCCACCCAGGAGCTGATCGAGGACCTCCGAAAGCAGCTGGAGCACCT
GCAGCTCCTCAAGCTGGAGGCCGAGCAGCGGCGGGGCCGCAGCAGCAGCATGGGCCTGCAGGAGTACCAC
AGCCGCGCCCGGGAGAGCGAGCTGGAGCAGGAGGTCCGCAGGCTGAAGCAGGACAACCGCAACCTGAAGG
AGCAGAACGAGGAGCTGAACGGGCAGATCATTACCCTCAGCATCCAGGGCGCCAAGAGCCTCTTCTCCAC
AGCCTTCTCTGAGTCCCTGGCTGCAGAGATCAGCTCCGTCTCCCGAGATGAGCTCATGGAGGCGATTCAG
AAGCAGGAGGAGATCAACTTCCGCCTGCAGGACTACATCGACAGGATCATCGTGGCCATCATGGAGACCA
ACCCGTCCATCCTGGAGGTCAAGTAG

Translation (801 aa):
MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAAADGGARW
SAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELDPLFSWTEEPEECGPASCPES
APFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGSPPQPSDLSQTHPLPSEPVGSQEDGPRLRAV
FDALDGDGDGFVRIEDFIQFATVYGAEQVKDLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVA
SAQDEEPLACPDEFDDFVTYEANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAV
PSECLDAMEEPDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLT
PSTDPLAAKLHSILTDEAFEFYCSQCHKQINRLEDLSARLSDLEMNSPTKRLSSKKVARYLHQSGALTME
ALEDPSPELMEGPEEDIADKVVFLERRVLELEKDTAATGEQHSRLRQENLQLVHRANALEEQLKEQELRA
CEMVLEETRRQKELLCKMEREKSIEIENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIES
LTLRLSEEQENKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEYH
SRARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAFSESLAAEISSVSRDELMEAIQ
KQEEINFRLQDYIDRIIVAIMETNPSILEVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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