NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS92535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92535.1 Public Homo sapiens 19 BRME1 24 110 108 CCDS HistoryNCBI Gene:79173Re-query CCDS DB by CCDS ID:92535.1Re-query CCDS DB by GeneID:79173See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 92535.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000591586.5 ENSP00000466723.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591586.5Link to Ensembl Protein Viewer:ENSP00000466723.1Re-query CCDS DB by Nucleotide ID:ENST00000591586Re-query CCDS DB by Protein ID:ENSP00000466723
Original member Current member NCBI NM_001345848.2 NP_001332777.2 Accepted alive Link to Nucleotide Sequence:NM_001345848.2Link to Protein Sequence:NP_001332777.2Re-query CCDS DB by Nucleotide ID:NM_001345848Re-query CCDS DB by Protein ID:NP_001332777Link to BLAST:NP_001332777.2

Chromosomal Locations for CCDS 92535.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13882802 13882952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13883308 13883400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13885961 13886055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13892786 13892890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13893142 13893223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13895372 13895546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13904862 13904892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGACTAAGAGGAAGAAGCTGCGGACCTCAGGAGAGGGACTCTGTCCTCCAAAACCCCTAAAGAACCCAA
GGCTAGGAGACTTCTATGGGGACCCCCAGAGTTCCATGTTGGGCTGTTTACATCACCCTGAGGAGCCAGA
GGGCAAATTGGGACCTGTTCCCTCTACACAGCAGCACGGGGAGGAACCAGGAAAGGCCGTCTCCAGCTCC
CCTGATGAGGAAACAGGATCTCCCTGCCGGCTCCTCCGTCAACCAGAAAAGGAGCCAGCTCCCCTTCCTC
CTTCCCAGAACTCATTCGGGAGGTTTGTTCCCCAGTTTGCAAAATCCAGGAAGACAGTGACAAGAAAAGA
AGAGATGAAGGATGAGGACCGTGGGAGTGGGGCCTTTAGCCTGCTCTTTCCTTCGGGGAACAAGCCGGGC
CCTTGCTGGCCGGGCCCCAGCTCACATGCCAATGGAGACCCTGTTGCAGTGGCCAAGGCCCAGCCGAGGA
CCTTCGTGGGGATCCAGGCCTCTGAGGCCTCCAGGATGGAGGATGCCACCAACGTCGTGCGTGGCCTCAT
CGTTGAGCTCTCCAACCTGAACCGGCTGATCATGGGCACCCACCGGGACCTGGAAGCTTTCAAGCGCCTT
AACTACCGGAAGACAAAGCTGGGAGGCAAAGCCCCCCTGCCTTACCCTTCCAAGGGGCCTGGGAATATCC
CTCGAGGGGACCCACCCTGGAGGGAGTTGTAG

Translation (243 aa):
MTKRKKLRTSGEGLCPPKPLKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHGEEPGKAVSSS
PDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLLFPSGNKPG
PCWPGPSSHANGDPVAVAKAQPRTFVGIQASEASRMEDATNVVRGLIVELSNLNRLIMGTHRDLEAFKRL
NYRKTKLGGKAPLPYPSKGPGNIPRGDPPWREL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH