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Report for CCDS93043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93043.1 Public Homo sapiens 20 L3MBTL1 24 110 108 CCDS HistoryNCBI Gene:26013Re-query CCDS DB by CCDS ID:93043.1Re-query CCDS DB by GeneID:26013See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 93043.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000418998.7 ENSP00000398516.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000418998.7Link to Ensembl Protein Viewer:ENSP00000398516.2Re-query CCDS DB by Nucleotide ID:ENST00000418998Re-query CCDS DB by Protein ID:ENSP00000398516
Original member Current member NCBI NM_001377303.1 NP_001364232.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001377303.1Link to Protein Sequence:NP_001364232.1Re-query CCDS DB by Nucleotide ID:NM_001377303Re-query CCDS DB by Protein ID:NP_001364232Link to BLAST:NP_001364232.1

Chromosomal Locations for CCDS 93043.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 43513504 43513639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43513838 43514061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43514635 43514776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43515009 43515159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43515292 43515415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43516093 43516177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43528657 43528745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43529264 43529368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43530284 43530419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43530798 43530889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43532773 43532924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43533342 43533418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43534008 43534093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43534284 43534394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43534828 43534942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43535837 43535936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43536097 43536294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43536409 43536458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43540151 43540308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43540753 43540815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43540934 43541128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2589 nt):
ATGGAGGGGCATGCTGAAATGGAGATGCTGAGGACACTGAAGGGGCCTTCCACAGGGGAGGTCAGCATGC
ACTTGGTGGCCGGAGACAGCCCCGGTTCTGGTCCTCACCTGCCCGCAACTGCCTTCATCATTCCAGCCAG
TTCGGCCACCCTCGGCCTGCCCAGCAGTGCCCTGGATGTGTCTTGCTTTCCCCGGGAGCCAATCCATGTG
GGTGCCCCGGAGCAAGTGGCCGGCTGCGAACCAGTTTCTGCCACCGTCCTGCCGCAGCTTAGCGCCGGGC
CGGCCAGCTCCAGCACCAGCACAGTGCGGCTTCTGGAATGGACAGAGGCCGCGGCCCCGCCCCCAGGGGG
CGGCCTGCGGTTCCGGATAAGCGAGTATAAGCCGCTGAACATGGCGGGAGTGGAGCAGCCCCCGAGCCCC
GAGCTGCGGCAGGAAGGCGTGACCGAATACGAAGATGGCGGGGCCCCGGCGGGAGATGGCGAGGCGGGCC
CCCAACAGGCGGAGGACCACCCCCAGAATCCTCCAGAAGATCCCAATCAGGACCCCCCAGAGGATGATAG
CACCTGTCAGTGCCAGGCGTGCGGGCCTCACCAAGCCGCGGGTCCAGATCTTGGTTCCTCTAATGATGGC
TGCCCTCAGCTGTTCCAGGAGCGGTCAGTCATAGTGGAGAACTCCTCAGGCTCTACCAGCGCTTCTGAGC
TCCTCAAACCCATGAAGAAGAGGAAGCGCAGGGAATACCAGAGCCCATCAGAGGAGGAGTCGGAGCCAGA
GGCCATGGAGAAGCAAGAAGAAGGAAAGGACCCAGAGGGACAACCCACTGCTAGCACCCCAGAGAGTGAG
GAGTGGAGCAGCAGCCAGCCTGCAACAGGTGAGAAGAAGGAATGCTGGTCGTGGGAGTCCTACCTAGAGG
AGCAGAAGGCCATTACTGCTCCAGTCAGCCTCTTCCAGGACTCCCAGGCAGTCACTCACAACAAGAATGG
CTTCAAACTGGGCATGAAGTTGGAAGGCATTGACCCTCAACACCCGTCCATGTACTTCATCCTCACCGTG
GCTGAGGTATGTGGCTATCGCCTACGCCTGCACTTTGATGGGTATTCTGAGTGCCATGACTTCTGGGTCA
ATGCCAACTCCCCTGACATTCACCCTGCTGGCTGGTTCGAGAAGACGGGCCACAAGCTGCAGCCTCCCAA
AGGTTACAAGGAGGAGGAGTTCAGCTGGAGCCAGTACCTGCGCAGCACAAGAGCTCAGGCTGCCCCCAAG
CACCTGTTTGTGAGCCAGAGCCACAGTCCCCCACCCCTGGGCTTCCAGGTGGGCATGAAGCTGGAGGCTG
TTGACCGCATGAACCCGTCCCTTGTCTGCGTGGCCAGTGTGACCGATGTGGTGGACAGCCGCTTCCTGGT
GCACTTTGACAACTGGGATGATACTTATGACTACTGGTGTGATCCCAGCAGCCCCTACATCCACCCAGTG
GGCTGGTGCCAGAAGCAAGGAAAGCCCCTCACCCCTCCACAAGACTACCCAGACCCTGATAACTTCTGTT
GGGAGAAATATCTGGAAGAAACTGGGGCCTCTGCTGTCCCCACCTGGGCCTTCAAGGTGCGACCCCCTCA
CAGCTTCCTGGTCAATATGAAGCTGGAGGCTGTGGACCGCAGGAACCCAGCCCTGATTCGCGTGGCCAGC
GTGGAGGATGTGGAGGACCATCGGATAAAGATCCACTTTGATGGCTGGAGTCATGGCTATGATTTCTGGA
TCGACGCTGACCACCCAGACATCCACCCTGCCGGCTGGTGCTCCAAGACAGGACATCCCCTGCAGCCTCC
TCTCGGACCCAGAGAGCCCAGCTCTGCCTCCCCTGGGGGCTGTCCCCCTCTCAGCTATAGGAGCCTGCCC
CACACTAGGACCTCCAAATACAGCTTTCACCACCGGAAGTGCCCCACTCCTGGTTGCGACGGCTCTGGCC
ATGTCACAGGCAAGTTCACAGCTCACCATTGCCTCTCAGGCTGCCCACTGGCTGAGAGGAACCAGAGCCG
GCTGAAAGCGGAGCTGTCTGACTCGGAGGCCTCAGCCCGCAAGAAGAACCTCTCAGGCTTCTCCCCAAGG
AAGAAGCCTCGCCATCACGGCCGAATTGGACGCCCTCCGAAGTATCGAAAGATTCCGCAGGAAGATTTCC
AGACCCTCACGCCCGATGTCGTGCACCAGTCCCTCTTCATGTCAGCCCTGTCGGCCCACCCTGACCGCTC
ACTCTCAGTGTGCTGGGAGCAGCACTGCAAGCTCCTGCCAGGAGTAGCGGGCATCTCAGCCTCGACAGTC
GCCAAGTGGACCATCGATGAGGTCTTCGGCTTTGTTCAGACCCTGACAGGTTGTGAGGACCAAGCACGCC
TCTTCAAAGACGAGGCAAGAATAGTCAGAGTGACCCATGTATCTGGGAAGACTCTAGTCTGGACTGTGGC
CCAGCTTGGGGACCTTGTGTGCTCAGATCATCTTCAGGAAGGAAAAGGCATCCTGGAGACAGGAGTCCAT
TCACTCCTCTGCTCTCTACCCACTCATTTGCTTGCCAAACTTAGCTTTGCCAGTGATAGTCAATATTAA

Translation (862 aa):
MEGHAEMEMLRTLKGPSTGEVSMHLVAGDSPGSGPHLPATAFIIPASSATLGLPSSALDVSCFPREPIHV
GAPEQVAGCEPVSATVLPQLSAGPASSSTSTVRLLEWTEAAAPPPGGGLRFRISEYKPLNMAGVEQPPSP
ELRQEGVTEYEDGGAPAGDGEAGPQQAEDHPQNPPEDPNQDPPEDDSTCQCQACGPHQAAGPDLGSSNDG
CPQLFQERSVIVENSSGSTSASELLKPMKKRKRREYQSPSEEESEPEAMEKQEEGKDPEGQPTASTPESE
EWSSSQPATGEKKECWSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTV
AEVCGYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPK
HLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPV
GWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRPPHSFLVNMKLEAVDRRNPALIRVAS
VEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLGPREPSSASPGGCPPLSYRSLP
HTRTSKYSFHHRKCPTPGCDGSGHVTGKFTAHHCLSGCPLAERNQSRLKAELSDSEASARKKNLSGFSPR
KKPRHHGRIGRPPKYRKIPQEDFQTLTPDVVHQSLFMSALSAHPDRSLSVCWEQHCKLLPGVAGISASTV
AKWTIDEVFGFVQTLTGCEDQARLFKDEARIVRVTHVSGKTLVWTVAQLGDLVCSDHLQEGKGILETGVH
SLLCSLPTHLLAKLSFASDSQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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