NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS93082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93082.1 Public Homo sapiens 21 SAMSN1 24 110 108 CCDS HistoryNCBI Gene:64092Re-query CCDS DB by CCDS ID:93082.1Re-query CCDS DB by GeneID:64092See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 93082.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000647101.1 ENSP00000493867.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647101.1Link to Ensembl Protein Viewer:ENSP00000493867.1Re-query CCDS DB by Nucleotide ID:ENST00000647101Re-query CCDS DB by Protein ID:ENSP00000493867
Original member Current member NCBI NM_001395857.1 NP_001382786.1 Accepted alive Link to Nucleotide Sequence:NM_001395857.1Link to Protein Sequence:NP_001382786.1Re-query CCDS DB by Nucleotide ID:NM_001395857Re-query CCDS DB by Protein ID:NP_001382786Link to BLAST:NP_001382786.1

Chromosomal Locations for CCDS 93082.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 14485912 14486114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14498442 14498592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14500529 14500735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14510310 14510461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14512444 14512573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14516892 14517041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14521150 14521221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14582136 14582488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14583650 14583776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14594013 14594078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14602023 14602099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14609482 14609568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14612876 14612913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14615976 14616016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14643002 14643133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 14658748 14658771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGAATCTTTTCTGCATTTCGCTGGAGGGCTCTATGGATAGCTTATATGAGCCAATCCCAGAGCAACAAG
CTAACCAAGAAAACATGTCTAGTAGAACTGATTCTCCTATCCCACCCTTTGGAGAGAGTGAACAAACACC
AAACAATCTCTTCGTGGGAGTTTCTAATTTAGAGAATGCAAAACCAAAAAAGAGAAAGTTATTCCGGAGA
TTTATGTCTGAAAATAAAATATTTGAAGGAAAAACTGTGAATGACAAAATCTGGCAGGAACACAGCAAGC
ATAAGAATGATTCCCACATCAGAAGGCCCTGTCAGCTAAAAGATCTAAATGAAGATGATTTTCTAAGTAA
CAACATACATACCTATCAAGGAAAAACTCTACAAGGAACTTCCTATCAGGTGACCTCTGAATGTTGGAGT
CCATTTCACTATCAAAGACATGTTGAGACCACTGTTGATGAACTGGCCATAAAATCAGGCAGTGACCCTG
TGGAATCAATGGGGACATTAAAGCGACTACAGAAACTGGTTTGGACTAAGAAAGCCAGAGTGCAGAATCT
GGATGAGGTGAAACCGACATTAATAAACCTCCAAGATGAAGATGACACGTTGATTTCTTGTTTGAAATTA
ACCAAGTCCCGAGAAAAGAAAGTGAATAGTGTTAGCACGAGGAGGAAGGAAGAAATGGAGATTAGATTGG
ATACTCTTTCTGCATCACTGGGTAGATCCAGCACTTTAAATAACTGCAACTTGGAAGATAAATTAGCTTG
GTATGAAGGTGAAGCTTACATGTGGCATCACTGGAAGCCTTTTCCTGAAAACCCTCTCTGGACATGTCTT
GATTTCCAAATAGCACAAGTTGGACCCTGGGACCACTGCTCCTCTTGTATTCGCCACACACGTCTCAAGT
CTTCCTGCTCAGATATGGATCTCCTACATTCATGGCGAAGCAGCAGTTTTGGGAATTTCGATCGTTTTCG
GAATAATTCTTTATCAAAACCAGATGATTCAACTGAGGCACATGAAGGAGATCCCACAAATGGAAGTGGA
GAACAAAGTAAAACTTCAAATAATGGAGGCGGTTTGGGTAAAAAAATGAGAGCTATTTCATGGACAATGA
AGAAAAAAGTGGGTAAAAAGTACATCAAAGCCCTTTCTGAGGAAAAGGATGAGGAAGATGGAGAGAATGC
CCACCCATATAGAAACAGTGACCCTGTGATTGGGACCCACACAGAGAAGGTGTCCCTCAAAGCCAGTGAC
TCCATGGATAGTCTCTACAGTGGACAGAGCTCATCAAGTGGCATAACAAGCTGTTCAGATGGTACAAGTA
ACCGGGACAGCTTTCGACTGGATGACGATGGCCCCTATTCAGGACCATTCTGTGGCCGTGCCAGAGTGCA
TACGGATTTCACGCCAAGTCCCTATGACACTGACTCCCTCAAAATCAAGAAAGGAGACATCATAGACATT
ATTTGCAAAACACCAATGGGGATGTGGACAGGAATGTTGAACAATAAAGTGGGAAACTTCAAATTCATTT
ATGTGGATGTCATCTCAGAAGAGGAAGCAGCCCCCAAGAAAATAAAGGCAAACCGAAGGAGTAACAGCAA
AAAATCCAAGACTCTGCAGGAGTTCCTAGAGAGGATTCATCTGCAGGAATACACCTCAACACTTTTGCTC
AATGGTTATGAGACTCTAGAAGATTTAAAAGATATAAAAGAGAGTCACCTCATTGAATTAAATATTGAAA
ACCCAGATGACAGAAGAAGGTTACTATCAGCTGCTGAAAACTTCCTTGAAGAAGAAATTATTCAAGAGCA
AGAAAATGAACCTGAGCCCCTATCCTTGAGCTCAGACATCTCCTTAAATAAGTCACAGTTAGATGACTGC
CCAAGGGACTCTGGTTGCTATATCTCATCAGGAAATTCAGATAATGGCAAAGAGGATCTGGAGTCTGAAA
ATCTGTCTGACATGGTACATAAGATTATTATCACAGAGCCAAGTGACTGA

Translation (669 aa):
MNLFCISLEGSMDSLYEPIPEQQANQENMSSRTDSPIPPFGESEQTPNNLFVGVSNLENAKPKKRKLFRR
FMSENKIFEGKTVNDKIWQEHSKHKNDSHIRRPCQLKDLNEDDFLSNNIHTYQGKTLQGTSYQVTSECWS
PFHYQRHVETTVDELAIKSGSDPVESMGTLKRLQKLVWTKKARVQNLDEVKPTLINLQDEDDTLISCLKL
TKSREKKVNSVSTRRKEEMEIRLDTLSASLGRSSTLNNCNLEDKLAWYEGEAYMWHHWKPFPENPLWTCL
DFQIAQVGPWDHCSSCIRHTRLKSSCSDMDLLHSWRSSSFGNFDRFRNNSLSKPDDSTEAHEGDPTNGSG
EQSKTSNNGGGLGKKMRAISWTMKKKVGKKYIKALSEEKDEEDGENAHPYRNSDPVIGTHTEKVSLKASD
SMDSLYSGQSSSSGITSCSDGTSNRDSFRLDDDGPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDI
ICKTPMGMWTGMLNNKVGNFKFIYVDVISEEEAAPKKIKANRRSNSKKSKTLQEFLERIHLQEYTSTLLL
NGYETLEDLKDIKESHLIELNIENPDDRRRLLSAAENFLEEEIIQEQENEPEPLSLSSDISLNKSQLDDC
PRDSGCYISSGNSDNGKEDLESENLSDMVHKIIITEPSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH