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Report for CCDS93219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93219.1 Public Homo sapiens 3 CCDC174 24 110 108 CCDS HistoryNCBI Gene:51244Re-query CCDS DB by CCDS ID:93219.1Re-query CCDS DB by GeneID:51244See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93219.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303688.8 ENSP00000302344.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000303688.8Link to Ensembl Protein Viewer:ENSP00000302344.7Re-query CCDS DB by Nucleotide ID:ENST00000303688Re-query CCDS DB by Protein ID:ENSP00000302344
Current member NCBI NM_001410719.1 NP_001397648.1 Accepted alive Link to Nucleotide Sequence:NM_001410719.1Link to Protein Sequence:NP_001397648.1Re-query CCDS DB by Nucleotide ID:NM_001410719Re-query CCDS DB by Protein ID:NP_001397648Link to BLAST:NP_001397648.1

Chromosomal Locations for CCDS 93219.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14651837 14651878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14654426 14654530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14655529 14655629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14658871 14658929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14661530 14661707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14665028 14665123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14666805 14666947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14669934 14670086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14670896 14671194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGACCGTAGGAAAAAGCCTTTGGACGTCACGGCCTCCTCGTTGGTAGATCTTAAGGCTGAACTCTTCC
GAAAGCAAGAAGAATTCAAACAAGAAAAACTTCTAAAAGATTCTGGAGTTTTTGGAAAACCAAAAACAAC
TAACAAGAAACCAAGTATCTGGAGCAAACAGAATGTAGGCGTTTCAAATCGAGCTGAGAAGGATGCTGAA
CAGAAGATTGAAGAACAGAAGACTTTAGACAAAGCAAGGGAAAAATTGGAAGAAAAAGCCAAATTATATG
AAAAAATGACTAAAGGAGACTTTATAGATGAAGAAGTAGAGGATATGTACCTTGTGGATTTCACACAGAA
GATCATAGACAAGCGCAAAGAAATGGAGGCATCTGGTGCCCATAGAGATTCTCAAAAGGCAGGAGAAAGG
GACGACGATGAGGAAAACCTTCCTGAGGGAGAGATCCCTCCTCCCCAAGACCCCAGTGAAGAATGGGTGG
ATTACGTGGACTCTTTGGGGCGTTCCCGGCGCTGTATGAGAAAGGATTTGCCAGATCTGCTGGAGATGGA
TAAAAATCTTCAGGGGAGACTTTTTATTAGTCCTGCTAATGAAAAAACCCTATTATCTGAAGATATGAGA
AAAGAACTTCAGCGCCAGCAATGGGAGGAAGAAGAAAGAGAGGCCCTGAAGAGGCCCATGGGGCCCGTAC
ATTATGAAGACATTCGGGAAAATGATGGAGATGTTATTGGGCCTTTGCCACCGGAGCCAGAGGCTGTGCC
AACCCCACGTCCTGCTGCCCAGAGTAGCAAAGTAGAAGTCATTGTCCAGGAGAGGAAGGACACCAAGCCT
GGAGTGCCACACATCCGGGAGTGGGACCGCGGAAAAGAATTTTCCTTTGGATACTGGTCGAAGAGGCAGT
CAGATCTCCGGGCTGAGAGAGATCCTGAGTTTGCCCCGCCGTCAGATTACTTTGTGGGTCAGAAGAGAAC
TGGTTTTTCCAGCAGCCAGGCATGGAGCAGACCTGGGCCAGCACAGAGTGACCCAGGGCAGTGCCCTGAC
CAGAGCCACGGACCTAGCCCTGAACATACGTCACCCACTCCTGCCCCCGACAACCCACCACAAGCCCCCA
CAGTTACTTTCAAAACTCTGGATGACATGATTTCCTATTACAAACAAGTGACATGA

Translation (391 aa):
MDRRKKPLDVTASSLVDLKAELFRKQEEFKQEKLLKDSGVFGKPKTTNKKPSIWSKQNVGVSNRAEKDAE
QKIEEQKTLDKAREKLEEKAKLYEKMTKGDFIDEEVEDMYLVDFTQKIIDKRKEMEASGAHRDSQKAGER
DDDEENLPEGEIPPPQDPSEEWVDYVDSLGRSRRCMRKDLPDLLEMDKNLQGRLFISPANEKTLLSEDMR
KELQRQQWEEEEREALKRPMGPVHYEDIRENDGDVIGPLPPEPEAVPTPRPAAQSSKVEVIVQERKDTKP
GVPHIREWDRGKEFSFGYWSKRQSDLRAERDPEFAPPSDYFVGQKRTGFSSSQAWSRPGPAQSDPGQCPD
QSHGPSPEHTSPTPAPDNPPQAPTVTFKTLDDMISYYKQVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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