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Report for CCDS93282.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93282.1 Public Homo sapiens 3 PPM1M 24 110 108 CCDS HistoryNCBI Gene:132160Re-query CCDS DB by CCDS ID:93282.1Re-query CCDS DB by GeneID:132160See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93282.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323588.9 ENSP00000319894.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323588.9Link to Ensembl Protein Viewer:ENSP00000319894.5Re-query CCDS DB by Nucleotide ID:ENST00000323588Re-query CCDS DB by Protein ID:ENSP00000319894
Original member Current member NCBI NM_144641.4 NP_653242.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144641.4Link to Protein Sequence:NP_653242.3Re-query CCDS DB by Nucleotide ID:NM_144641Re-query CCDS DB by Protein ID:NP_653242Link to BLAST:NP_653242.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653242.3 459 Q96MI6-5 459 100% 0 0

Chromosomal Locations for CCDS 93282.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52245825 52246048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52246695 52246812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52246974 52247228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52247682 52247794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52248153 52248237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52248335 52248453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52248637 52248700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52248956 52249063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52249174 52249322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52249670 52249814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGTCCGCCGGCTGGTTCCGGCGCCGCTTCCTGCCTGGGGAGCCGCTCCCCGCGCCGCGGCCGCCTGGGC
CGCATGCCAGCCCCGTGCCCTACCGACGGCCCCGCTTCCTTCGCGGCTCCAGCTCCAGCCCCGGGGCGGC
CGACGCCTCGCGCCGCCCAGACTCCCGGCCCGTGCGCAGCCCCGCACGAGGACGCACGCTACCCTGGAAT
GCAGGCTACGCCGAGATTATCAATGCAGAGAAATCTGAATTCAATGAGGATCAAGCCGCCTGTGGGAAGC
TGTGCATCCGGAGATGTGAGTTTGGGGCTGAAGAAGAGTGGCTGACCCTGTGCCCAGAGGAGTTCCTGAC
AGGCCATTACTGGGCACTGTTCGATGGGCACGGCGGTCCTGCAGCAGCCATCTTGGCTGCCAACACCCTG
CACTCCTGCTTGCGCCGGCAGCTGGAGGCCGTGGTGGAAGGCTTGGTGGCCACTCAGCCCCCCATGCACC
TCAATGGCCGCTGCATCTGCCCCAGTGACCCTCAGTTTGTGGAGGAAAAGGGCATCAGGGCAGAAGACTT
GGTGATCGGGGCATTGGAGAGTGCCTTTCAGGAATGTGATGAGGTGATCGGGCGGGAGCTGGAGGCCTCA
GGCCAGATGGGCGGCTGCACAGCCCTGGTGGCTGTGTCCCTGCAGGGAAAGCTGTACATGGCCAATGCTG
GGGATAGCAGGGCCATCTTGGTGCGGAGAGATGAGATACGGCCACTGAGCTTCGAGTTCACCCCAGAGAC
TGAGCGGCAGCGGATCCAGCAGCTGGCCTTTGTCTATCCTGAGCTTCTGGCTGGTGAGTTCACCCGACTG
GAGTTCCCTCGGCGGCTGAAGGGGGATGACTTGGGACAGAAGGTTTTGTTCAGGGATCACCACATGAGTG
GCTGGAGCTACAAACGTGTGGAGAAATCGGATCTCAAGTACCCACTGATCCATGGACAGGGTAGGCAGGC
TCGGTTACTAGGAACACTGGCTGTCTCCCGGGGCCTGGGAGACCATCAGCTCAGAGTCCTGGACACAAAC
ATCCAGCTCAAGCCCTTCTTGCTCTCTGTGCCACAGGTGACTGTGCTGGATGTGGACCAGCTGGAGCTAC
AGGAGGATGATGTGGTTGTCATGGCAACTGATGGACTCTGGGATGTACTGTCCAACGAGCAGGTGGCATG
GCTGGTGCGGAGCTTCCTCCCTGGGAACCAAGAGGACCCACACAGGTTCTCAAAGCTGGCCCAGATGCTG
ATACACAGCACACAGGGAAAGGAAGACAGTCTCACAGAGGAAGGGCAGGTGTCCTACGATGACGTCTCTG
TGTTCGTGATTCCCTTGCACAGTCAGGGCCAAGAGAGCAGTGACCACTGA

Translation (459 aa):
MSAGWFRRRFLPGEPLPAPRPPGPHASPVPYRRPRFLRGSSSSPGAADASRRPDSRPVRSPARGRTLPWN
AGYAEIINAEKSEFNEDQAACGKLCIRRCEFGAEEEWLTLCPEEFLTGHYWALFDGHGGPAAAILAANTL
HSCLRRQLEAVVEGLVATQPPMHLNGRCICPSDPQFVEEKGIRAEDLVIGALESAFQECDEVIGRELEAS
GQMGGCTALVAVSLQGKLYMANAGDSRAILVRRDEIRPLSFEFTPETERQRIQQLAFVYPELLAGEFTRL
EFPRRLKGDDLGQKVLFRDHHMSGWSYKRVEKSDLKYPLIHGQGRQARLLGTLAVSRGLGDHQLRVLDTN
IQLKPFLLSVPQVTVLDVDQLELQEDDVVVMATDGLWDVLSNEQVAWLVRSFLPGNQEDPHRFSKLAQML
IHSTQGKEDSLTEEGQVSYDDVSVFVIPLHSQGQESSDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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