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Report for CCDS93475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93475.1 Public Homo sapiens 4 SH3TC1 24 110 108 CCDS HistoryNCBI Gene:54436Re-query CCDS DB by CCDS ID:93475.1Re-query CCDS DB by GeneID:54436See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93475.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000684698.1 ENSP00000506945.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684698.1Link to Ensembl Protein Viewer:ENSP00000506945.1Re-query CCDS DB by Nucleotide ID:ENST00000684698Re-query CCDS DB by Protein ID:ENSP00000506945
Current member NCBI NM_001410712.1 NP_001397641.1 Accepted alive Link to Nucleotide Sequence:NM_001410712.1Link to Protein Sequence:NP_001397641.1Re-query CCDS DB by Nucleotide ID:NM_001410712Re-query CCDS DB by Protein ID:NP_001397641Link to BLAST:NP_001397641.1

Chromosomal Locations for CCDS 93475.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 8205195 8205366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8209748 8209822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8212701 8212828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8214475 8214580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8216111 8216257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8216957 8217167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8218271 8218347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8219335 8219449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8222840 8222970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8225175 8225216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8226980 8228644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8231976 8232156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8233363 8233513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8235433 8235555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8236278 8236428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8237474 8237670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8240698 8240955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3930 nt):
ATGGAGAACCTCCCTGCCGTGACCACTGAGGAGCCGACCCCCATGGGGAGGGGTCCTGTGGGACCCTCAG
GAGGTGGCAGCACCCGGGACCAGGTCCGGACTGTGGTCATGAGGCCCTCTGTGAGCTGGGAGAAAGCGGG
GCCCGAGGAGGCCAAGGCGCCAGTGAGAGGCGACGAGGCTCCTCCTGCCCGCGTGGCTGGGCCTGCTGCT
GGGACCCCTCCCTGCCAGATGGGGGTTTATCCCACAGACCTGACCCTGCAGCTGCTGGCTGTGCGGAGGA
AGAGCAGACTGCGGGACCCCGGCCTACAGCAGACCCTCCGGGGCCAGCTCCGCCTGCTGGAGAATGATAG
CCGGGAGATGGCCCGCGTGCTTGGGGAATTATCAGCCAGGCTGCTGTCCATCCACAGTGACCAGGACCGG
ATCGTGGTGACGTTTAAGACTTTTGAAGAAATCTGGAAGTTTTCCACCTACCATGCTCTCGGCTTCACTC
ATCACTGCCTGGCAAACCTGCTCATGGACCAGGCCTTCTGGCTGCTCTTGCCCAGTGAGGAGGAGGAGAC
GGCCATCCAAGTCCATGTGGATGAGAACGCCTTAAGGCTGACCCACGAGAGCCTCCTCATCCAAGAAGGG
CCCTTCTTTGTCCTGTGTCCTGACCACCATGTGAGAGTGATGACGGGTCCCCGGGATGCAGGAAATGGCC
CCCAGGCCCTCAGGCAGGCTTCGGGGGCACCCCAGGGAGAGGCGGCCCCGGAAACAGACTCTTCACCGCC
GAGCCCCAGCGTGTCCTCCGAGGAGGTGGCAGTGGCGGCCGCCCCGGAGCCTTTGATTCCATTTCATCAG
TGGGCTCTTAGGATCCCCCAGGACCCCATCGACGATGCCATGGGTGGCCCTGTGATGCCCGGCAACCCGC
TGATGGCTGTGGGCCTGGCCTCGGCATTGGCAGACTTCCAGGGCTCGGGGCCCGAAGAGATGACCTTCCG
AGGTGGCGACCTCATCGAGATCCTTGGGGCGCAGGTGCCCAGCCTGCCCTGGTTGGAAAGTGCGATTTTT
CTCAATGAGGAAGAAAAGTCATTCTTCAGCGAGGGCTGCTTTTCTGAGGAGGATGCCAGGCAGTTGCTGA
GGCGGATGTCGGGCACCGATGTCTGCAGCGTGTACAGCCTGGACTCAGTAGAGGAAGCTGAGACCGAGCA
GCCGCAGGAAAAAGAAATACCTCCACCTTGCCTGAGCCTGGAGCCACAGGAGACCTTGCAGAAGGTGAAG
AATGTTCTGGAACAATGCAAGACCTGCCCAGGCTGCCCCCAGGAGCCAGCGTCCTGGGGTCTCTGTGCGG
CATCCAGCGACGTGAGCTTGCAGGACCCCGAGGAGCCCTCCTTCTGCTTGGAAGCCGAGGACGACTGGGA
GGACCCAGAGGCCCTGAGCTCACTGCTGCTGTTCCTGAACGCCCCTGGGTACAAGGCCAGCTTCCGTGGC
CTGTACGATGTGGCGCTGCCGTGGCTGAGCAGCGTGTTCCGCAGCTTCAGCGACGAGGAGGAGCTGACTG
GGCGCCTGGCACAGGCCCGGGGGGCGGCCAAGAAAGCTGGCCTCCTCATGGCCCTGGCCAGGCTCTGCTT
CCTCCTGGGGCGGCTGTGCAGCAGGAGGCTCAAGCTGTCCCAGGCCCGGGTGTACTTTGAGGAAGCGCTG
GGGGCCCTGGAGGGCAGCTTCGGGGACCTGTTCCTAGTGGTGGCTGTGTACGCCAACCTGGCCAGCATTT
ACCGGAAGCAGAAGAACCGGGAGAAGTGTGCACAGGTGGTGCCCAAAGCCATGGCCCTGCTCCTGGGGAC
GCCTGACCACATCTGCAGCACCGAGGCGGAGGGGGAGCTCCTGCAGCTGGCGCTGCGGCGGGCGGTGGGT
GGCCAGAGCCTGCAGGCCGAGGCCCGGGCCTGCTTCCTGCTGGCCAGGCACCACGTGCACCTCAAGCAGC
CCGAGGAGGCCCTGCCCTTCCTAGAGCGGCTGCTGCTTTTGCACAGGGACTCGGGAGCCCCAGAGGCCGC
GTGGCTCTCAGACTGCTACCTACTCCTGGCTGACATCTACAGCCGCAAGTGCCTGCCCCACCTGGTGCTG
AGCTGTGTCAAGGTGGCCTCATTGCGGACACGGGGCTCGCTGGCCGGCTCGCTGAGGAGTGTGAACCTGG
TGCTCCAGAACGCCCCCCAGCCCCACAGCCTCCCTGCCCAAACTTCCCACTACCTCAGGCAAGCGCTGGC
CTCCCTGACCCCGGGCACAGGCCAGGCGCTGCGCGGCCCCCTCTACACCAGCTTGGCCCAGCTGTACAGC
CACCATGGCTGCCACGGCCCGGCCATCACCTTCATGACGCAGGCAGTGGAAGCCAGTGCTATTGCCGGAG
TCCGTGCCATCGTGGACCACCTGGTGGCCCTGGCCTGGCTGCACGTGCTTCATGGGCAGAGCCCGGTGGC
CCTGGACATCCTGCAGTCTGTCCGGGATGCAGTGGTGGCCAGCGAGGACCAGGAGGGCGTGATTGCCAAC
ATGGTGGCCGTGGCTCTGAAGAGGACGGGCCGGACGAGGCAGGCAGCTGAGAGCTACTACCGCGCCCTGC
GGGTGGCTCGGGACCTGGGCCAGCAAAGGAACCAGGCAGTGGGGCTGGCCAACTTCGGGGCCCTGTGCCT
GCATGCGGGTGCCAGCAGGCTGGCCCAGCACTACCTCCTGGAGGCCGTGCGGCTGTTCTCGAGGCTGCCC
CTTGGGGAGTGTGGCCGGGACTTCACCCACGTGCTCCTGCAGCTGGGCCATCTCTGCACCCGCCAGGGCC
CGGCCCAGCAGGGCAAGGGCTACTACGAGTGGGCCCTTCTGGTCGCCGTGGAGATGGGCCACGTGGAGAG
CCAGCTGCGGGCCGTCCAGCGGCTGTGCCACTTCTACAGCGCCGTCATGCCCAGCGAGGCCCAGTGTGTC
ATCTACCATGAGCTCCAGCTCTCCCTGGCCTGCAAGGTGGCCGACAAGGTGCTGGAGGGGCAGCTCCTGG
AGACCATCAGCCAGCTCTACCTGTCCCTGGGCACCGAGCGGGCCTACAAATCCGCACTGGACTACACCAA
ACGAAGTCTGGGGATTTTCATTGACCTCCAGAAGAAAGAGAAGGAGGCGCATGCCTGGCTGCAAGCAGGG
AAGATCTATTACATCTTGCGGCAGAGCGAGCTGGTGGACCTCTACATCCAGGTGGCACAGAACGTGGCCC
TGTACACAGGCGACCCCAACCTGGGGCTGGAGCTGTTTGAGGCGGCTGGAGACATCTTCTTCGACGGGGC
CTGGGAGCGGGAGAAAGCTGTGTCCTTCTACCGGGACCGGGCCCTGCCCCTGGCAGTGACTACGGGCAAC
CGCAAGGCGGAGCTGCGGCTGTGCAACAAGCTGGTGGCACTGCTGGCCACGCTGGAGGAGCCCCAGGAGG
GCTTGGAGTTTGCCCACATGGCCCTAGCACTCAGCATCACCCTGGGGGACCGGCTGAACGAGCGCGTGGC
CTACCACCGGCTGGCCGCCCTGCAACACCGACTGGGCCATGGCGAGCTGGCAGAGCACTTCTACCTCAAG
GCCCTGTCGCTCTGCAACTCGCCGCTGGAGTTTGACGAGGAGACCCTCTACTACGTGAAGGTGTACCTGG
TGCTCGGTGACATCATCTTCTACGACCTGAAGGACCCGTTTGATGCAGCCGGGTACTACCAGCTGGCGCT
GGCAGCCGCCGTGGACCTGGGCAACAAGAAGGCACAGCTGAAGATCTACACGCGGCTGGCCACCATCTAC
CACAACTTCCTCCTGGACCGTGAGAAGTCGCTCTTCTTCTACCAGAAGGCCAGGACCTTCGCCACAGAGC
TCAACGTCCGCAGGGTCAACCTGCCTCCTCTGCCACTCTGCGGGTGGGCCCCCTGGTTGGCCCCCAGCCA
CCCTCGCTGA

Translation (1309 aa):
MENLPAVTTEEPTPMGRGPVGPSGGGSTRDQVRTVVMRPSVSWEKAGPEEAKAPVRGDEAPPARVAGPAA
GTPPCQMGVYPTDLTLQLLAVRRKSRLRDPGLQQTLRGQLRLLENDSREMARVLGELSARLLSIHSDQDR
IVVTFKTFEEIWKFSTYHALGFTHHCLANLLMDQAFWLLLPSEEEETAIQVHVDENALRLTHESLLIQEG
PFFVLCPDHHVRVMTGPRDAGNGPQALRQASGAPQGEAAPETDSSPPSPSVSSEEVAVAAAPEPLIPFHQ
WALRIPQDPIDDAMGGPVMPGNPLMAVGLASALADFQGSGPEEMTFRGGDLIEILGAQVPSLPWLESAIF
LNEEEKSFFSEGCFSEEDARQLLRRMSGTDVCSVYSLDSVEEAETEQPQEKEIPPPCLSLEPQETLQKVK
NVLEQCKTCPGCPQEPASWGLCAASSDVSLQDPEEPSFCLEAEDDWEDPEALSSLLLFLNAPGYKASFRG
LYDVALPWLSSVFRSFSDEEELTGRLAQARGAAKKAGLLMALARLCFLLGRLCSRRLKLSQARVYFEEAL
GALEGSFGDLFLVVAVYANLASIYRKQKNREKCAQVVPKAMALLLGTPDHICSTEAEGELLQLALRRAVG
GQSLQAEARACFLLARHHVHLKQPEEALPFLERLLLLHRDSGAPEAAWLSDCYLLLADIYSRKCLPHLVL
SCVKVASLRTRGSLAGSLRSVNLVLQNAPQPHSLPAQTSHYLRQALASLTPGTGQALRGPLYTSLAQLYS
HHGCHGPAITFMTQAVEASAIAGVRAIVDHLVALAWLHVLHGQSPVALDILQSVRDAVVASEDQEGVIAN
MVAVALKRTGRTRQAAESYYRALRVARDLGQQRNQAVGLANFGALCLHAGASRLAQHYLLEAVRLFSRLP
LGECGRDFTHVLLQLGHLCTRQGPAQQGKGYYEWALLVAVEMGHVESQLRAVQRLCHFYSAVMPSEAQCV
IYHELQLSLACKVADKVLEGQLLETISQLYLSLGTERAYKSALDYTKRSLGIFIDLQKKEKEAHAWLQAG
KIYYILRQSELVDLYIQVAQNVALYTGDPNLGLELFEAAGDIFFDGAWEREKAVSFYRDRALPLAVTTGN
RKAELRLCNKLVALLATLEEPQEGLEFAHMALALSITLGDRLNERVAYHRLAALQHRLGHGELAEHFYLK
ALSLCNSPLEFDEETLYYVKVYLVLGDIIFYDLKDPFDAAGYYQLALAAAVDLGNKKAQLKIYTRLATIY
HNFLLDREKSLFFYQKARTFATELNVRRVNLPPLPLCGWAPWLAPSHPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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