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Report for CCDS9348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9348.1 Public Homo sapiens 13 STARD13 24 110 108 CCDS HistoryNCBI Gene:90627Re-query CCDS DB by CCDS ID:9348.1Re-query CCDS DB by GeneID:90627See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9348.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336934.10 ENSP00000338785.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336934.10Link to Ensembl Protein Viewer:ENSP00000338785.4Re-query CCDS DB by Nucleotide ID:ENST00000336934Re-query CCDS DB by Protein ID:ENSP00000338785
Original member Current member NCBI NM_178006.4 NP_821074.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178006.4Link to Protein Sequence:NP_821074.1Re-query CCDS DB by Nucleotide ID:NM_178006Re-query CCDS DB by Protein ID:NP_821074Link to BLAST:NP_821074.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_821074.1 1113 Q9Y3M8-1 1113 100% 0 0

Chromosomal Locations for CCDS 9348.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 33105593 33105710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33106758 33106934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33109873 33110090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33110686 33110907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33111778 33111892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33112721 33112931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33118065 33118263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33126081 33126240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33127373 33127546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33128929 33130289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33142310 33142373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33165337 33165418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33167551 33167622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 33285470 33285638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3342 nt):
ATGTTCAGTCAGGTGCCCAGGACCCCAGCCTCAGGCTGCTACTACCTAAATTCCATGACACCTGAGGGCC
AGGAGATGTACTTGCGATTTGATCAGACTACAAGACGCTCTCCTTACAGGATGAGCCGGATTCTAGCACG
CCATCAGCTAGTGACTAAAATTCAACAAGAAATTGAGGCAAAAGAAGCATGTGACTGGCTCCGTGCTGCC
GGGTTCCCGCAATACGCTCAGTTATATGAGGATTCACAATTTCCCATCAACATTGTGGCTGTCAAGAATG
ATCATGATTTTCTTGAAAAGGACCTTGTAGAACCTCTTTGCAGACGACTAAATACGTTGAACAAGTGTGC
CTCAATGAAACTTGATGTGAACTTCCAAAGGAAAAAGGGTGACGACTCCGATGAGGAAGATCTTTGTATC
AGCAACAAATGGACTTTCCAAAGAACCAGTCGCAGGTGGTCTCGTGTGGACGACCTCTACACGCTGCTCC
CTCGAGGAGACAGAAATGGGTCACCGGGAGGCACGGGGATGAGGAACACGACCAGCAGTGAGAGCGTCCT
CACAGACCTGAGCGAGCCTGAGGTCTGCTCCATTCACAGCGAAAGCAGTGGAGGCAGCGACAGTCGCAGC
CAGCCGGGCCAGTGCTGTACAGACAACCCGGTCATGCTGGATGCCCCACTCGTCAGCAGCAGCCTCCCAC
AGCCCCCCAGAGATGTCCTCAACCACCCCTTCCACCCCAAGAATGAGAAGCCCACGAGGGCTAGGGCCAA
ATCATTTTTGAAACGCATGGAAACACTCCGAGGGAAGGGAGCCCACGGGAGGCATAAGGGGTCTGGGCGG
ACAGGTGGCCTGGTGATCAGTGGGCCCATGTTGCAGCAGGAGCCAGAGTCCTTTAAGGCTATGCAGTGCA
TCCAAATACCAAATGGAGATCTCCAGAATTCGCCGCCACCTGCCTGCAGAAAAGGGCTCCCATGCTCTGG
CAAGTCGAGTGGCGAGAGCAGCCCGTCGGAGCACAGCAGCAGCGGGGTGAGCACGCCCTGCCTGAAGGAA
CGCAAGTGCCACGAGGCCAACAAGCGCGGGGGCATGTACTTGGAGGACCTAGATGTGCTGGCGGGGACAG
CACTGCCGGATGCAGGGGACCAAAGCCGTATGCATGAATTTCACTCCCAAGAGAATTTGGTGGTGCATAT
TCCCAAGGATCACAAACCAGGAACATTCCCCAAGGCACTTTCTATTGAAAGCCTCTCTCCCACAGATAGT
AGCAATGGGGTTAATTGGAGGACCGGTAGCATCTCCCTGGGCAGAGAGCAGGTCCCTGGTGCCAGGGAGC
CCCGGCTCATGGCGTCCTGCCACAGAGCCAGCCGAGTCAGTATCTATGACAATGTCCCTGGCTCCCATCT
GTATGCCAGCACAGGAGATCTTTTGGACTTGGAGAAAGATGACCTTTTCCCTCACTTGGATGACATTCTG
CAGCATGTCAATGGGCTCCAAGAGGTAGTCGATGACTGGTCCAAAGATGTCTTGCCTGAACTGCAAACTC
ATGATACATTGGTTGGGGAACCTGGCTTATCCACCTTTCCATCTCCTAATCAGATCACCTTAGATTTTGA
AGGTAACTCTGTCTCAGAAGGTCGGACGACACCCAGTGATGTGGAAAGAGATGTAACATCTCTTAATGAA
TCTGAGCCTCCTGGGGTCAGAGACAGGAGGGATTCTGGTGTAGGGGCCTCTCTGACCAGGCCAAACAGGC
GACTCCGATGGAACAGTTTCCAGCTGTCGCACCAGCCCCGGCCGGCCCCAGCATCGCCCCACATCAGCAG
CCAGACGGCCAGCCAGCTGAGCCTGCTCCAGCGCTTCTCACTGCTCCGCCTCACGGCCATCATGGAGAAG
CACTCCATGTCCAACAAGCACGGCTGGACATGGTCAGTTCCAAAGTTCATGAAGAGGATGAAAGTTCCCG
ACTACAAAGACAAGGCTGTCTTTGGCGTTCCTCTCATAGTCCACGTCCAAAGAACGGGACAGCCCCTGCC
TCAAAGTATTCAGCAAGCACTGAGATATCTACGCAGCAACTGCCTCGATCAGGTGGGTCTTTTTCGCAAA
TCAGGAGTGAAGTCTCGAATCCATGCCCTTCGCCAAATGAATGAAAACTTCCCTGAGAACGTCAACTATG
AAGACCAGTCTGCTTATGATGTGGCGGATATGGTGAAACAGTTCTTCCGGGACCTCCCTGAGCCTCTTTT
CACCAACAAGCTCAGTGAGACCTTTCTCCATATCTATCAGTATGTCTCCAAAGAGCAGCGGCTGCAGGCC
GTGCAGGCTGCCATCCTGCTACTGGCCGATGAGAACAGGGAGGTCCTGCAGACGCTCTTGTGTTTCCTGA
ACGACGTCGTCAACTTGGTGGAAGAGAATCAGATGACGCCCATGAACCTGGCAGTGTGTCTGGCCCCCTC
CCTCTTTCATCTTAATTTATTGAAGAAAGAAAGCTCTCCACGAGTCATACAGAAGAAATATGCCACTGGG
AAGCCAGATCAAAAGGACCTCAACGAGAATCTGGCAGCAGCTCAGGGGCTAGCGCACATGATCATGGAAT
GCGACAGACTTTTTGAGGTTCCACACGAGTTGGTGGCCCAGTCTCGTAACTCGTATGTGGAGGCTGAGAT
CCACGTGCCAACCCTGGAAGAATTGGGGACACAGCTGGAGGAGAGTGGGGCAACTTTCCACACTTACCTG
AACCATCTCATCCAGGGCCTCCAGAAAGAAGCCAAGGAGAAGTTCAAAGGATGGGTCACGTGCTCCAGCA
CGGACAATACAGATCTTGCTTTCAAAAAGGTGGGCGACGGGAACCCGCTGAAGCTGTGGAAGGCTTCTGT
GGAGGTGGAAGCACCCCCCTCAGTGGTCCTGAACCGCGTGCTGAGAGAGCGCCACCTGTGGGACGAGGAC
TTTGTGCAGTGGAAGGTTGTGGAAACTCTAGACAGGCAAACAGAGATCTACCAGTATGTGCTGAACAGCA
TGGCTCCCCATCCTTCCAGAGACTTTGTGGTTCTCAGGACCTGGAAAACTGATTTGCCCAAAGGAATGTG
TACCCTGGTGTCCCTCTCCGTGGAGCATGAGGAAGCCCAGCTCCTGGGTGGTGTGCGAGCAGTGGTGATG
GACTCGCAGTACTTGATAGAACCGTGTGGCTCTGGCAAGTCAAGACTGACTCACATCTGCAGGATAGACC
TGAAAGGTCACTCCCCAGAATGGTACAGCAAAGGCTTTGGACATCTGTGTGCAGCAGAAGTTGCCAGGAT
TAGAAACTCTTTCCAGCCCCTCATTGCTGAGGGCCCAGAAACTAAAATCTGA

Translation (1113 aa):
MFSQVPRTPASGCYYLNSMTPEGQEMYLRFDQTTRRSPYRMSRILARHQLVTKIQQEIEAKEACDWLRAA
GFPQYAQLYEDSQFPINIVAVKNDHDFLEKDLVEPLCRRLNTLNKCASMKLDVNFQRKKGDDSDEEDLCI
SNKWTFQRTSRRWSRVDDLYTLLPRGDRNGSPGGTGMRNTTSSESVLTDLSEPEVCSIHSESSGGSDSRS
QPGQCCTDNPVMLDAPLVSSSLPQPPRDVLNHPFHPKNEKPTRARAKSFLKRMETLRGKGAHGRHKGSGR
TGGLVISGPMLQQEPESFKAMQCIQIPNGDLQNSPPPACRKGLPCSGKSSGESSPSEHSSSGVSTPCLKE
RKCHEANKRGGMYLEDLDVLAGTALPDAGDQSRMHEFHSQENLVVHIPKDHKPGTFPKALSIESLSPTDS
SNGVNWRTGSISLGREQVPGAREPRLMASCHRASRVSIYDNVPGSHLYASTGDLLDLEKDDLFPHLDDIL
QHVNGLQEVVDDWSKDVLPELQTHDTLVGEPGLSTFPSPNQITLDFEGNSVSEGRTTPSDVERDVTSLNE
SEPPGVRDRRDSGVGASLTRPNRRLRWNSFQLSHQPRPAPASPHISSQTASQLSLLQRFSLLRLTAIMEK
HSMSNKHGWTWSVPKFMKRMKVPDYKDKAVFGVPLIVHVQRTGQPLPQSIQQALRYLRSNCLDQVGLFRK
SGVKSRIHALRQMNENFPENVNYEDQSAYDVADMVKQFFRDLPEPLFTNKLSETFLHIYQYVSKEQRLQA
VQAAILLLADENREVLQTLLCFLNDVVNLVEENQMTPMNLAVCLAPSLFHLNLLKKESSPRVIQKKYATG
KPDQKDLNENLAAAQGLAHMIMECDRLFEVPHELVAQSRNSYVEAEIHVPTLEELGTQLEESGATFHTYL
NHLIQGLQKEAKEKFKGWVTCSSTDNTDLAFKKVGDGNPLKLWKASVEVEAPPSVVLNRVLRERHLWDED
FVQWKVVETLDRQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVM
DSQYLIEPCGSGKSRLTHICRIDLKGHSPEWYSKGFGHLCAAEVARIRNSFQPLIAEGPETKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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