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Report for CCDS93559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93559.1 Public Homo sapiens 4 HERC3 24 110 108 CCDS HistoryNCBI Gene:8916Re-query CCDS DB by CCDS ID:93559.1Re-query CCDS DB by GeneID:8916See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93559.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000512194.2 ENSP00000421021.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512194.2Link to Ensembl Protein Viewer:ENSP00000421021.2Re-query CCDS DB by Nucleotide ID:ENST00000512194Re-query CCDS DB by Protein ID:ENSP00000421021
Original member Current member NCBI NM_001375478.1 NP_001362407.1 Accepted alive Link to Nucleotide Sequence:NM_001375478.1Link to Protein Sequence:NP_001362407.1Re-query CCDS DB by Nucleotide ID:NM_001375478Re-query CCDS DB by Protein ID:NP_001362407Link to BLAST:NP_001362407.1
Original member Current member NCBI NM_001375479.1 NP_001362408.1 Accepted alive Link to Nucleotide Sequence:NM_001375479.1Link to Protein Sequence:NP_001362408.1Re-query CCDS DB by Nucleotide ID:NM_001375479Re-query CCDS DB by Protein ID:NP_001362408Link to BLAST:NP_001362408.1

Chromosomal Locations for CCDS 93559.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88605824 88606049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88649840 88649999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88652012 88652088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88652869 88653090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88654042 88654133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88655174 88655304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88655875 88656035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88658415 88658491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88662431 88662555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88664153 88664212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88667377 88667488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88667892 88668081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88669860 88670023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88670139 88670252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88676334 88676423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88677964 88678134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88680093 88680236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88681159 88681325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88686736 88686802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88687217 88687299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88704098 88704281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88704508 88704610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88706752 88706960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3129 nt):
ATGTTATGTTGGGGATATTGGTCTCTGGGCCAACCTGGTATCAGCACCAACCTGCAGGGAATTGTGGCTG
AGCCCCAGGTGTGTGGGTTCATATCTGACAGAAGTGTCAAGGAAGTGGCCTGTGGGGGAAACCACTCTGT
GTTCCTGCTGGAAGATGGGGAAGTTTACACATGTGGTTTGAACACCAAGGGGCAACTGGGCCATGAGAGG
GAAGGAAACAAGCCAGAACAAATTGGAGCTCTGGCAGATCAGCATATCATTCATGTGGCATGTGGCGAGT
CCCACAGTCTGGCCCTCAGTGACCGAGGCCAGCTGTTTTCTTGGGGTGCAGGGAGTGATGGTCAGCTAGG
ACTCATGACTACTGAGGATTCTGTGGCAGTGCCCAGGTTAATACAAAAGCTGAACCAGCAAACAATATTA
CAAGTTTCCTGTGGCAACTGGCATTGCTTGGCTCTTGCGGCTGATGGCCAGTTCTTCACCTGGGGAAAGA
ACAGCCATGGGCAGCTTGGCTTAGGGAAGGAGTTCCCCTCCCAAGCCAGCCCACAGAGGGTGAGGTCCCT
GGAGGGGATCCCACTGGCTCAGGTGGCTGCCGGAGGGGCTCACAGCTTTGCCCTGTCTCTCTCAGGAGCT
GTTTTTGGCTGGGGGATGAATAATGCCGGGCAGCTAGGGCTCAGTGATGAAAAAGATCGAGAATCTCCAT
GCCATGTAAAACTCTTACGCACGCAAAAAGTTGTCTATATTAGTTGTGGAGAAGAACACACAGCAGTTCT
CACAAAGAGTGGAGGTGTGTTTACCTTTGGCGCTGGTTCCTGTGGGCAACTTGGACACGACTCCATGAAT
GATGAGGTTAACCCTAGAAGAGTTCTAGAGCTGATGGGTAGTGAAGTAACTCAAATTGCTTGTGGCAGAC
AACATACCCTAGCCTTCGTGCCTTCTTCTGGACTCATCTATGCATTTGGTTGTGGAGCAAGAGGTCAATT
AGGAACTGGGCACACTTGTAATGTTAAGTGCCCATCTCCTGTCAAGGGTTACTGGGCTGCCCACAGTGGC
CAGCTTTCAGCCCGAGCTGATCGCTTTAAATATCATATCGTTAAGCAGATCTTCTCTGGAGGAGACCAGA
CTTTTGTACTTTGCTCCAAATACGAGAATTATTCTCCTGCTGTTGACTTCAGGACTATGAACCAAGCACA
TTATACCAGTTTAATAAATGATGAAACCATAGCAGTTTGGAGACAAAAACTCTCAGAACACAACAATGCA
AATACAATCAATGGTGTTGTTCAGATATTATCTTCTGCAGCCTGTTGGAATGGAAGTTTTCTTGAAAAAA
AAATTGATGAACATTTTAAAACGAGTCCCAAAATCCCTGGGATTGACCTGAACTCAACTAGGGTGTTATT
TGAGAAGTTAATGAACTCTCAGCACTCCATGATTCTAGAACAGATTTTGAACAGTTTTGAAAGTTGTCTG
ATTCCCCAGTTGTCAAGCTCACCACCAGATGTTGAAGCCATGAGAATCTATTTAATACTACCTGAGTTTC
CCCTACTCCAGGATTCCAAGTATTATATAACATTGACTATTCCCTTGGCTATGGCCATTCTTCGGCTGGA
TACAAACCCCAGCAAAGTACTAGATAACTGGTGGTCTCAGGTATGCCCGAAATATTTCATGAAGCTGGTA
AACCTCTATAAAGGTGCAGTCCTTTATCTACTGAGGGGAAGAAAGACATTCTTAATTCCCGTACTGTTTA
ACAATTATATCACAGCAGCTCTCAAACTCTTGGAGAAGTTATATAAGGTAAATCTTAAAGTGAAGCATGT
GGAATATGATACATTTTACATTCCTGAGATTTCCAATCTCGTGGACATTCAGGAAGACTACCTCATGTGG
TTCTTGCATCAAGCAGGGATGGATACTGTAACACTTTGTTCCTACCCTTTCATCTTTGATGCCCAAGCCA
AGACCAAAATGTTACAGACAGATGCTGAACTACAGATGCAGGTGGCAGTCAATGGAGCCAACCTGCAGAA
TGTCTTCATGCTTCTCACCCTGGAGCCTCTGCTGGCCAGAAGCCCCTTCCTGGTCCTTCACGTTCGCAGG
AACAACCTTGTTGGAGATGCCCTAAGAGAGCTGAGCATTCATTCTGATATTGATTTGAAAAAGCCTCTCA
AAGTAATCTTTGATGGTGAAGAAGCAGTGGATGCCGGTGGTGTTACAAAGGAATTTTTTCTTTTGCTGTT
AAAAGAACTTTTGAATCCCATCTATGGAATGTTTACCTACTATCAAGATTCAAATCTCTTGTGGTTTTCA
GACACGTGTTTTGTAGAGCACAACTGGTTTCACTTGATTGGTATAACCTGTGGACTAGCTATCTACAACT
CCACTGTGGTCGATCTCCACTTCCCATTGGCTCTCTACAAGAAGTTACTCAATGTAAAGCCTGGCTTGGA
AGACTTAAAGGAGTTGTCACCCACTGAAGGAAGGAGTCTCCAAGAGCTTTTAGATTACCCCGGGGAGGAT
GTGGAGGAGACTTTCTGCCTCAACTTCACGATCTGCCGAGAAAGCTATGGAGTGATTGAACAGAAGAAGC
TGATACCTGGGGGAGATAATGTAACTGTGTGCAAGGATAACAGGCAGGAATTTGTGGATGCTTATGTGAA
TTATGTCTTCCAAATCTCAGTTCATGAATGGTACACAGCCTTCTCTAGTGGCTTCCTAAAGGTGTGTGGT
GGCAAAGTACTTGAGCTCTTCCAGCCTTCAGAACTGAGGGCTATGATGGTGGGGAACAGCAACTACAACT
GGGAAGAACTGGAAGAGACTGCCATCTACAAGGGAGATTACTCGGCCACACATCCCACTGTAAAACTATT
TTGGGAAACATTTCATGAGTTTCCATTGGAAAAGAAGAAGAAGTTTCTCTTGTTCCTGACAGGCAGCGAT
CGGATTCCCATCTACGGCATGGCCAGTCTGCAGATTGTCATCCAGTCCACAGCCAGCGGGGAGGAGTACT
TGCCGGTGGCCCACACTTGCTACAACCTTCTTGACCTCCCCAAGTACAGCAGCAAAGAGATTCTGAGTGC
CCGGCTGACCCAGGCCCTTGACAACTATGAAGGGTTTAGTTTGGCCTGA

Translation (1042 aa):
MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGNHSVFLLEDGEVYTCGLNTKGQLGHER
EGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTIL
QVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGA
VFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMN
DEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSG
QLSARADRFKYHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMNQAHYTSLINDETIAVWRQKLSEHNNA
NTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSMILEQILNSFESCL
IPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNPSKVLDNWWSQVCPKYFMKLV
NLYKGAVLYLLRGRKTFLIPVLFNNYITAALKLLEKLYKVNLKVKHVEYDTFYIPEISNLVDIQEDYLMW
FLHQAGMDTVTLCSYPFIFDAQAKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRR
NNLVGDALRELSIHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFS
DTCFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQELLDYPGED
VEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQISVHEWYTAFSSGFLKVCG
GKVLELFQPSELRAMMVGNSNYNWEELEETAIYKGDYSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSD
RIPIYGMASLQIVIQSTASGEEYLPVAHTCYNLLDLPKYSSKEILSARLTQALDNYEGFSLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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