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Report for CCDS93752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93752.1 Public Homo sapiens 5 CHD1 24 110 108 CCDS HistoryNCBI Gene:1105Re-query CCDS DB by CCDS ID:93752.1Re-query CCDS DB by GeneID:1105See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93752.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511067.3 ENSP00000479403.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511067.3Link to Ensembl Protein Viewer:ENSP00000479403.2Re-query CCDS DB by Nucleotide ID:ENST00000511067Re-query CCDS DB by Protein ID:ENSP00000479403
Original member Current member NCBI NM_001364113.3 NP_001351042.1 Accepted alive Link to Nucleotide Sequence:NM_001364113.3Link to Protein Sequence:NP_001351042.1Re-query CCDS DB by Nucleotide ID:NM_001364113Re-query CCDS DB by Protein ID:NP_001351042Link to BLAST:NP_001351042.1

Chromosomal Locations for CCDS 93752.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 98856380 98856725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98858180 98858390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98858964 98859015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98859972 98860068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98863408 98863586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98868495 98868635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98869014 98869277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98869754 98869882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98870687 98870803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98872051 98872201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98872417 98872555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98873593 98873723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98875072 98875113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98876398 98876558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98879552 98879728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98881076 98881171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98881279 98881375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98881975 98882123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98883088 98883237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98885578 98885649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98888088 98888240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98889076 98889238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98892525 98892713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98893416 98893606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98894597 98894686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98896226 98896442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98897193 98897320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98898256 98898434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98898664 98898764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98899480 98899705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98900811 98901082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98901186 98901335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98902900 98902964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98903792 98903908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98904897 98905098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98926334 98926386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5397 nt):
ATGAATGGACACAGTGATGAAGAAAGTGTTAGAAACAGTAGTGGAGAATCAAGCCAGTCGGATGATGATT
CT
GGGTCAGCTTCAGGCTCTGGATCTGGTTCGAGTTCTGGAAGCAGTAGTGATGGAAGCAGTAGCCAGTC
A
GGTAGCAGTGACTCTGACTCCGGATCTGAATCAGGCAGTCAGTCAGAGTCTGAGTCAGACACTTCCCGA
GAA
AACAAAGTTCAAGCAAAACCACCGAAAGTTGATGGAGCTGAGTTTTGGAAATCTAGTCCTAGTATTC
TG
GCCGTTCAGAGATCTGCAATCCTCAAGAAGCAGCAACAGCAGCAGCAGCAACAACAACATCAAGCCTC
A
TCTAATAGCGGATCAGAAGAGGATTCCTCTAGCAGTGAAGATTCCGATGACTCATCAAGTGAGGTCAAA
AGG
AAAAAGCATAAAGATGAAGATTGGCAAATGTCTGGGTCAGGATCTCCATCTCAGTCTGGTTCAGATT
CA
GAATCTGAAGAAGAGAGAGAGAAAAGCAGTTGTGATGAAACAGAATCTGATTATGAGCCAAAAAACAA
A
GTCAAAAGCAGAAAACCTCAAAATAGATCTAAGTCAAAAAATGGAAAGAAGATTCTTGGACAAAAAAAG
AGA
CAGATTGATTCATCTGAGGAGGATGATGATGAAGAAGATTATGATAATGATAAAAGAAGTTCTCGTC
GC
CAAGCAACTGTTAATGTTAGCTATAAGGAGGATGAAGAAATGAAAACAGATTCTGATGACCTACTGGA
A
GTCTGTGGAGAGGATGTTCCTCAACCTGAGGAAGAGGAATTTGAAACCATAGAAAGATTTATGGATTGT
CGG
ATTGGGAGAAAAGGAGCTACTGGTGCTACTACAACCATCTATGCAGTTGAAGCAGATGGTGACCCAA
AT
GCAGGCTTTGAAAAAAACAAAGAACCAGGAGAGATTCAGTATTTAATTAAATGGAAAGGATGGTCCCA
T
ATCCACAACACTTGGGAGACAGAAGAAACCCTCAAGCAGCAGAATGTTAGAGGAATGAAAAAATTGGAT
AAT
TATAAGAAAAAAGATCAGGAAACAAAAAGATGGTTGAAAAATGCCTCTCCAGAAGATGTGGAATATT
AT
AATTGCCAGCAAGAACTTACAGATGATCTACATAAACAGTATCAAATAGTGGAACGTATAATTGCTCA
T
TCCAATCAAAAGTCAGCAGCTGGTTATCCTGATTATTACTGCAAATGGCAGGGCCTTCCATACTCAGAG
TGC
AGCTGGGAAGATGGAGCTCTCATTTCCAAAAAGTTTCAAGCATGCATTGATGAGTATTTTAGCAGGA
AC
CAATCAAAAACCACTCCTTTTAAAGATTGCAAAGTATTAAAACAAAGGCCAAGGTTTGTAGCCCTGAA
G
AAGCAGCCATCCTATATTGGAGGACATGAGGGCTTAGAATTAAGAGATTATCAACTGAATGGTTTAAAT
TGG
CTTGCTCATTCTTGGTGCAAAGGAAATAGTTGCATACTCGCTGATGAAATGGGCCTTGGAAAAACAA
TA
CAGACGATCTCATTTCTGAATTATTTGTTTCATGAACATCAATTATATGGACCTTTTTTATTGGTAGT
A
CCGCTCTCCACTCTTACTTCCTGGCAAAGGGAAATTCAGACTTGGGCTTCTCAAATGAATGCTGTGGTT
TAT
TTAGGTGACATTAACAGCAGAAACATGATAAGAACTCATGAATGGACGCATCATCAGACCAAACGGT
TA
AAATTTAATATATTGTTAACAACTTATGAAATTTTATTAAAAGATAAGGCATTCCTTGGAGGTCTAAA
T
TGGGCATTTATAGGTGTTGATGAAGCACACCGATTAAAGAATGATGACTCCCTTCTGTATAAAACTTTA
ATA
GATTTTAAATCCAATCATCGTCTCCTTATCACTGGAACTCCTCTACAGAATTCCCTCAAAGAGCTCT
GG
TCTTTGCTACATTTCATTATGCCAGAAAAGTTTTCTTCCTGGGAAGATTTTGAAGAAGAACATGGCAA
A
GGGAGAGAATATGGTTATGCAAGCCTTCACAAGGAGCTTGAGCCATTTCTGTTACGCCGAGTTAAGAAA
GAT
GTGGAAAAATCTCTTCCTGCCAAGGTTGAGCAGATTTTAAGAATGGAAATGAGTGCTTTACAGAAAC
AA
TATTACAAATGGATTTTAACTAGGAATTACAAAGCCCTCAGCAAAGGTTCCAAGGGCAGTACCTCAGG
C
TTTTTGAACATTATGATGGAGCTAAAGAAATGTTGTAACCATTGCTACCTCATTAAACCACCAGATAAT
AAT
GAATTCTATAATAAACAGGAGGCCTTACAACACTTAATTCGTAGTAGCGGAAAATTGATTCTTCTTG
AC
AAGCTATTAATTCGCCTAAGAGAACGAGGCAATCGAGTTCTTATTTTTTCACAAATGGTGCGGATGTT
A
GATATACTTGCAGAATATTTGAAATATCGTCAATTCCCCTTTCAAAGATTAGATGGATCAATAAAAGGA
GAA
CTGAGGAAACAAGCTCTAGATCATTTTAATGCTGAGGGATCAGAGGATTTTTGCTTTTTGCTGTCCA
CA
AGAGCTGGAGGTCTAGGGATTAATTTAGCCTCTGCTGACACTGTTGTTATATTTGATTCCGATTGGAA
T
CCACAGAATGATCTTCAGGCACAGGCTAGAGCCCATCGAATTGGGCAAAAGAAACAGGTGAATATTTAT
CGT
CTAGTTACAAAGGGATCAGTTGAAGAAGATATTCTTGAAAGGGCGAAAAAGAAGATGGTTTTAGATC
AT
CTTGTAATTCAAAGAATGGACACAACTGGGAAGACAGTACTACATACAGGTTCTGCCCCATCAAGTTC
T
ACTCCTTTCAATAAAGAAGAGTTATCAGCCATTTTAAAGTTTGGTGCTGAAGAACTTTTTAAGGAACCT
GAA
GGAGAAGAACAAGAGCCCCAGGAAATGGATATAGATGAAATCTTGAAGAGAGCTGAAACTCATGAAA
AT
GAACCAGGTCCTTTAACTGTAGGAGATGAATTGCTTTCCCAGTTCAAGGTTGCCAACTTCTCAAATAT
G
GATGAGGATGACATTGAGTTGGAACCTGAAAGAAATTCAAAGAATTGGGAGGAAATTATTCCAGAAGAT
CAA
AGAAGACGATTAGAAGAAGAAGAAAGACAAAAGGAACTTGAAGAAATTTATATGCTCCCAAGAATGA
GA
AATTGTGCAAAACAGATTAGTTTCAATGGAAGTGAAGGGAGGCGCAGTAGAAGTAGGAGATACTCTGG
A
TCTGATAGTGATTCCATCTCAGAAGGGAAAAGGCCAAAGAAACGTGGAAGACCACGGACTATTCCTCGG
GAG
AATATTAAAGGATTTAGTGATGCAGAAATTAGGCGGTTTATCAAGAGCTATAAGAAATTTGGTGGTC
CT
CTGGAAAGATTAGATGCAATTGCTCGAGATGCTGAGTTAGTTGATAAGTCAGAAACAGACCTTAGACG
A
CTGGGAGAATTGGTACATAATGGTTGCATTAAAGCATTAAAGGATAGTTCTTCAGGAACAGAACGAACA
G
GT
GGTAGACTCGGAAAAGTGAAGGGTCCAACATTCCGAATATCAGGAGTACAGGTGAATGCCAAACTAG
TC
ATCTCCCATGAAGAAGAATTAATACCTTTGCACAAATCCATTCCTTCTGATCCAGAAGAAAGAAAGCA
G
TATACTATCCCATGCCACACAAAGGCAGCTCATTTTGATATAGACTGGGGCAAAGAAGATGATTCCAAT
TTG
TTAATTGGCATCTATGAATATGGATATGGAAGCTGGGAAATGATTAAAATGGATCCTGACCTCAGTC
TA
ACACACAAGATTCTTCCAGATGATCCCGATAAAAAACCACAAGCAAAACAGTTGCAGACCCGTGCAGA
C
TACCTCATCAAATTACTTAGTAGAGATCTTGCAAAAAAAGAAGCTCTTTCTGGTGCGGGAAGTTCAAAG
AGG
AGAAAAGCAAGAGCTAAGAAGAATAAAGCAATGAAGTCTATAAAAGTGAAAGAGGAAATAAAGAGTG
AT
TCTTCTCCTCTGCCTTCAGAGAAGTCTGATGAAGATGATGATAAAGATGAGATCAGTTCTGTGAAACA
T
CCAAATAAAAAAATTAAAACAGAAAGAGACAGTGAAGAAAAACCTGAGCCAGATGTTTATATAAAGAAG
GAA
CCAGAAGAAAAGAGGGAAGCAAAAGAAAAGGAGAATAAAAAAGAACTTAAAAGGGAGATAAAAGAAA
AA
GAGGATAAGAAAGATATAAAGGAAAAAGATTTTAAAGAAAAAAGAGAAAACAAAGTAAAAGAAGCTAT
A
CAGAAAGAAAAAGACATAAAGGAAGAAAAGTTGAGTGAATCCAAGTCTGATGGTAGGGAAAGATCCAAG
AAA
TCTTCAGTGTCAGATGCTCCAGTTCATATCACGGCAAGTGGTGAACCAGTTCCCATTTCTGAAGAAT
CT
GAAGAGCTGGATCAGAAGACATTCAGCATTTGTAAAGAAAGAATGAGGCCTGTTAAAGCAGCTTTGAA
A
CAACTTGATAGGCCTGAGAAAGGCCTTTCAGAAAGAGAACAACTAGAGCATACTAGACAATGTTTAATA
AAA
ATTGGAGACCATATCACAGAATGTCTAAAAGAGTATACAAATCCTGAACAAATTAAGCAATGGAGAA
A
A
AACCTGTGGATTTTTGTATCTAAGTTTACTGAATTTGATGCAAGAAAATTACATAAATTATATAAGCA
T
GCTATTAAAAAACGGCAGGAGTCTCAGCAAAACAGTGATCAAAACAGCAACTTGAATCCTCACGTGATT
AGA
AATCCAGATGTGGAAAGATTAAAAGAGAATACAAATCACGATGATAGCAGCAGGGACAGTTATTCCT
CT
GATAGACACTTAACTCAGTACCATGATCATCATAAAGACCGACATCAGGGAGATTCTTACAAAAAAAG
T
GATTCCAGGAAAAGACCCTATTCTTCTTTTAGTAATGGTAAAGACCATCGTGATTGGGATCACTACAAG
CAA
GACAGCAGATATTACAGTGACAGAGAGAAACACAGAAAACTGGATGATCACAGGAGTAGAGATCACA
GG
TCAAATTTGGAAGGAAGTTTAAAAGATAGATCTCATTCTGATCATCGTTCTCACTCAGATCATCGGTT
A
CATTCAGACCACCGGTCAAGTTCTGAATATACGCACCATAAATCTTCCAGGGATTATAGGTATCACTCA
GAC
TGGCAAATGGACCACAGAGCTTCCAGCAGTGGCCCTAGGTCACCACTAGATCAGAGATCTCCTTATG
GC
TCCAGATCTCCATTTGAACATTCAGTTGAACACAAAAGTACACCGGAGCATACCTGGAGTAGTCGGAA
A
ACATAA


Translation (1798 aa):
MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESDTSR
E
NKVQAKPPKVDGAE
FWKSSPSILAVQRSAILKKQQQQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVK
R
KKHK
DEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKK
R
QIDSSEEDDDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDC
R
IGRKG
ATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLD
N
YKKKDQETKR
WLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSE
C
SWEDGALISKKFQACIDEYFSRNQSKTTPFKDCK
VLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLN
W
LAHSWC
KGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVV
Y
LGDINSRNM
IRTHEWTHHQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTL
I
DFKSNHRLLITGTPLQNSLKELWSLLHFIMPE
KFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKK
D
VEKSLPAKVEQILRMEMSALQKQYY
KWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDN
N
EFYNKQEALQ
HLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKG
E
LRKQALDHFNAEGSE
DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIY
R
LVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPS
SSTPFNKEELSAILKFGAEELFKEP
E
GEEQEPQ
EMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPED
Q
RRRLEEEERQKELEEIYMLPRMRNCAKQ
ISFNGSEGRRSRSRRYSGSDSDSISEGKRPKKRGRPRTIPR
E
NIKGFSDAEIR
RFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERT
G
GRLGKVKGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSN
L
LIGIYEYGYGSWEMIKMDPDLSLTHK
ILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKEALSGAGSSK
R
RKARAKKNKAMKSIKVKEEIKSDSSPLPSEKSDEDDDK
DEISSVKHPNKKIKTERDSEEKPEPDVYIKK
E
PEEKREAKEKENKKELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEK
LSESKSDGRERSK
K
SSVSDAPVHITASGEPVPISEESEELDQKTFSI
CKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLI
K
IGDHITECLKEYTNPEQIKQWR
KNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNSDQNSNLNPHVI
R
NP
DVERLKENTNHDDSSRDSYSSDRHLTQYHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHRDWDHYK
Q
DS
RYYSDREKHRKLDDHRSRDHRSNLEGSLKDRSHSDHRSHSDHRLHSDHRSSSEYTHHKSSRDYRYHS
D
WQMDHRASSSGPRSPLDQRSPYGSRSPFEHSVEHKSTPEHTWSSRKT




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser