NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS94421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94421.1 Public Homo sapiens 9 C9orf85 24 110 108 CCDS HistoryNCBI Gene:138241Re-query CCDS DB by CCDS ID:94421.1Re-query CCDS DB by GeneID:138241See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94421.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377031.7 ENSP00000366230.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377031.7Link to Ensembl Protein Viewer:ENSP00000366230.3Re-query CCDS DB by Nucleotide ID:ENST00000377031Re-query CCDS DB by Protein ID:ENSP00000366230
Original member Current member NCBI NM_001365053.2 NP_001351982.1 Accepted alive Link to Nucleotide Sequence:NM_001365053.2Link to Protein Sequence:NP_001351982.1Re-query CCDS DB by Nucleotide ID:NM_001365053Re-query CCDS DB by Protein ID:NP_001351982Link to BLAST:NP_001351982.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351982.1 179 Q96MD7-3 179 100% 0 0

Chromosomal Locations for CCDS 94421.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 71911735 71911836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71947006 71947112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71971505 71971618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71982657 71982873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGAGCTCCCAGAAAGGCAACGTGGCTCGTTCCAGACCTCAGAAGCACCAGAATACGTTTAGCTTCAAAA
ATGACAAGTTCGATAAAAGTGTGCAGACCAAGAAAATTAATGCAAAACTTCATGATGGAGTATGTCAGCG
CTGTAAAGAAGTTCTTGAGTGGCGTGTAAAATACAGCAAATACAAACCATTATCAAAACCTAAAAAGTGT
GTTAAATGTTTACAAAAGACAGTGAAGGATTCTTATCACATAATGTGCAGGCCATGTGCCTGTGAACTTG
AAGTTTGCGCAAAATGTGGAAAGAAAGAAGACATTGTTATTCCATGGAGTCTCCCTCTGTTGCCCAGGCT
GGAGTGCAGTGGCAGGATCTTGGCTCACCACAACCTCCGCCTCCCTTGTTCAAGTGATTCTCCTGCCTCA
GCCTCTCGAGTAGCTGGGACTACAGGCGCACACCACCATGCCCAGCTAATCTTTGTATTTTTAGTAGAGA
TGGGGTTTCACTATGTTGGCCAGGCCGGTCTCGAACTCCTGACCTCATGA

Translation (179 aa):
MSSQKGNVARSRPQKHQNTFSFKNDKFDKSVQTKKINAKLHDGVCQRCKEVLEWRVKYSKYKPLSKPKKC
VKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIVIPWSLPLLPRLECSGRILAHHNLRLPCSSDSPAS
ASRVAGTTGAHHHAQLIFVFLVEMGFHYVGQAGLELLTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH