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Report for CCDS9534.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9534.2 Public Homo sapiens 13 GRTP1 24 110 108 CCDS HistoryNCBI Gene:79774Re-query CCDS DB by CCDS ID:9534.2Re-query CCDS DB by GeneID:79774See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9534.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375431.9 ENSP00000364580.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375431.9Link to Ensembl Protein Viewer:ENSP00000364580.3Re-query CCDS DB by Nucleotide ID:ENST00000375431Re-query CCDS DB by Protein ID:ENSP00000364580
Original member Current member NCBI NM_024719.4 NP_078995.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024719.4Link to Protein Sequence:NP_078995.2Re-query CCDS DB by Nucleotide ID:NM_024719Re-query CCDS DB by Protein ID:NP_078995Link to BLAST:NP_078995.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078995.2 336 Q5TC63-1 336 100% 0 0

Chromosomal Locations for CCDS 9534.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 113324488 113324577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113325661 113325846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113325919 113326091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113344863 113344959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113350849 113350973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113355323 113355481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113363762 113363910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113364020 113364051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGCAGCCCGCCGAGCGCTCGCGGGTCCCCAGGATCGACCCGTACGGATTCGAGCGGCCTGAGGACTTCG
ACGACGCCGCCTACGAGAAGTTTTTCTCCAGCTACCTGGTCACGCTCACCCGCAGGGCGATCAAATGGTC
CCGGCTGCTGCAGGGCGGGGGCGTCCCCAGGAGCCGGACAGTGAAGCGCTATGTCCGGAAAGGGGTCCCG
CTGGAGCACCGTGCCCGCGTCTGGATGGTGCTGAGTGGGGCCCAGGCGCAGATGGACCAGAATCCCGGCT
ACTACCACCAGCTTCTCCAGGGAGAGAGAAACCCCAGGCTGGAGGACGCCATCAGGACAGACCTGAACCG
GACCTTCCCCGACAACGTGAAGTTCCGGAAGACCACGGACCCCTGCTTACAGAGGACCCTGTACAATGTG
CTGCTGGCATATGGGCACCATAACCAGGGAGTGGGCTACTGCCAGGGAATGAATTTTATAGCAGGATATC
TGATTCTTATAACAAATAATGAAGAAGAATCTTTTTGGCTGTTAGATGCTCTTGTTGGAAGAATACTACC
AGATTACTACAGCCCGGCCATGCTGGGCCTGAAGACCGACCAGGAGGTCCTCGGGGAGCTGGTGCGGGCG
AAGCTGCCGGCTGTGGGGGCCCTGATGGAGCGTCTCGGTGTGCTGTGGACGCTGCTGGTGTCCCGCTGGT
TCATCTGCCTGTTTGTGGACATCTTGCCCGTGGAGACAGTGCTTCGGATCTGGGACTGTTTGTTTAACGA
AGGCTCGAAGATTATCTTCCGGGTGGCCCTGACCTTAATTAAGCAGCACCAGGAGTTGATTTTGGAAGCC
ACCAGCGTTCCAGACATTTGCGATAAGTTTAAGCAGATAACCAAAGGGAGTTTCGTGATGGAGTGTCACA
CGTTTATGCAGAAAATATTTTCAGAACCTGGAAGCTTATCCATGGCCACCGTCGCCAAGCTCCGCGAGAG
CTGCAGGGCCCGGCTGCTGGCACAGGGGTGA

Translation (336 aa):
MQPAERSRVPRIDPYGFERPEDFDDAAYEKFFSSYLVTLTRRAIKWSRLLQGGGVPRSRTVKRYVRKGVP
LEHRARVWMVLSGAQAQMDQNPGYYHQLLQGERNPRLEDAIRTDLNRTFPDNVKFRKTTDPCLQRTLYNV
LLAYGHHNQGVGYCQGMNFIAGYLILITNNEEESFWLLDALVGRILPDYYSPAMLGLKTDQEVLGELVRA
KLPAVGALMERLGVLWTLLVSRWFICLFVDILPVETVLRIWDCLFNEGSKIIFRVALTLIKQHQELILEA
TSVPDICDKFKQITKGSFVMECHTFMQKIFSEPGSLSMATVAKLRESCRARLLAQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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