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Report for CCDS1012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1012.1 Public Homo sapiens 1 CRCT1 24 110 108 CCDS HistoryNCBI Gene:54544Re-query CCDS DB by CCDS ID:1012.1Re-query CCDS DB by GeneID:54544See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1012.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368790.4 ENSP00000357779.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368790.4Link to Ensembl Protein Viewer:ENSP00000357779.3Re-query CCDS DB by Nucleotide ID:ENST00000368790Re-query CCDS DB by Protein ID:ENSP00000357779
Original member Current member NCBI NM_019060.3 NP_061933.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019060.3Link to Protein Sequence:NP_061933.1Re-query CCDS DB by Nucleotide ID:NM_019060Re-query CCDS DB by Protein ID:NP_061933Link to BLAST:NP_061933.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061933.1 99 Q9UGL9 99 100% 0 0

Chromosomal Locations for CCDS 1012.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152515384 152515683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGTCCTCTCAACAGAGCGCCGTTTCCGCCAAAGGCTTTTCCAAGGGGTCGTCCCAGGGCCCCGCTCCGT
GTCCCGCCCCGGCGCCCACCCCGGCGCCCGCCTCCTCCTCCTCCTGCTGCGGCTCCGGCAGGGGCTGCTG
CGGCGACTCAGGCTGCTGCGGCTCCAGCTCCACCAGTTGCTGCTGCTTCCCAAGGAGACGCCGCCGACAG
CGGAGTAGTGGTTGCTGCTGCTGCGGGGGCGGCAGCCAGAGGTCCCAGCGCTCCAACAACCGGAGCTCAG
GATGCTGCTCCGGCTGCTGA

Translation (99 aa):
MSSQQSAVSAKGFSKGSSQGPAPCPAPAPTPAPASSSSCCGSGRGCCGDSGCCGSSSTSCCCFPRRRRRQ
RSSGCCCCGGGSQRSQRSNNRSSGCCSGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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