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Report for CCDS10370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10370.1 Public Homo sapiens 15 SV2B 24 110 108 CCDS HistoryNCBI Gene:9899Re-query CCDS DB by CCDS ID:10370.1Re-query CCDS DB by GeneID:9899See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10370.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330276.4 ENSP00000332818.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000330276.4Link to Ensembl Protein Viewer:ENSP00000332818.4Re-query CCDS DB by Nucleotide ID:ENST00000330276Re-query CCDS DB by Protein ID:ENSP00000332818
Original member Current member EBI ENST00000394232.6 ENSP00000377779.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394232.6Link to Ensembl Protein Viewer:ENSP00000377779.1Re-query CCDS DB by Nucleotide ID:ENST00000394232Re-query CCDS DB by Protein ID:ENSP00000377779
Original member Current member EBI ENST00000557410.5 ENSP00000450992.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000557410.5Link to Ensembl Protein Viewer:ENSP00000450992.1Re-query CCDS DB by Nucleotide ID:ENST00000557410Re-query CCDS DB by Protein ID:ENSP00000450992
Original member Current member NCBI NM_001323031.2 NP_001309960.1 Accepted alive Link to Nucleotide Sequence:NM_001323031.2Link to Protein Sequence:NP_001309960.1Re-query CCDS DB by Nucleotide ID:NM_001323031Re-query CCDS DB by Protein ID:NP_001309960Link to BLAST:NP_001309960.1
Original member Current member NCBI NM_001323032.3 NP_001309961.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001323032.3Link to Protein Sequence:NP_001309961.1Re-query CCDS DB by Nucleotide ID:NM_001323032Re-query CCDS DB by Protein ID:NP_001309961Link to BLAST:NP_001309961.1
Original member Current member NCBI NM_001323037.3 NP_001309966.1 Accepted alive Link to Nucleotide Sequence:NM_001323037.3Link to Protein Sequence:NP_001309966.1Re-query CCDS DB by Nucleotide ID:NM_001323037Re-query CCDS DB by Protein ID:NP_001309966Link to BLAST:NP_001309966.1
Original member Current member NCBI NM_001323038.3 NP_001309967.1 Accepted alive Link to Nucleotide Sequence:NM_001323038.3Link to Protein Sequence:NP_001309967.1Re-query CCDS DB by Nucleotide ID:NM_001323038Re-query CCDS DB by Protein ID:NP_001309967Link to BLAST:NP_001309967.1
Original member Current member NCBI NM_001323039.3 NP_001309968.1 Accepted alive Link to Nucleotide Sequence:NM_001323039.3Link to Protein Sequence:NP_001309968.1Re-query CCDS DB by Nucleotide ID:NM_001323039Re-query CCDS DB by Protein ID:NP_001309968Link to BLAST:NP_001309968.1
Original member Current member NCBI NM_014848.7 NP_055663.1 Accepted alive Link to Nucleotide Sequence:NM_014848.7Link to Protein Sequence:NP_055663.1Re-query CCDS DB by Nucleotide ID:NM_014848Re-query CCDS DB by Protein ID:NP_055663Link to BLAST:NP_055663.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309960.1 683 Q7L1I2-1 683 100% 0 0
NP_001309961.1 683 Q7L1I2-1 683 100% 0 0
NP_001309966.1 683 Q7L1I2-1 683 100% 0 0
NP_001309967.1 683 Q7L1I2-1 683 100% 0 0
NP_001309968.1 683 Q7L1I2-1 683 100% 0 0
NP_055663.1 683 Q7L1I2-1 683 100% 0 0

Chromosomal Locations for CCDS 10370.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 91226264 91226714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91251819 91251999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91252369 91252520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91258421 91258554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91260320 91260409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91266582 91266692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91267555 91267643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91268441 91268605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91281728 91281861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91284021 91284221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91289521 91289680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91292369 91292552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2052 nt):
ATGGATGACTACAAGTATCAGGACAATTATGGGGGCTATGCTCCCAGTGATGGCTATTACCGCGGCAATG
AG
TCCAACCCAGAAGAAGATGCACAGAGTGATGTCACCGAAGGCCATGATGAGGAAGACGAGATCTATGA
G
GGCGAGTACCAGGGTATCCCTCACCCAGATGATGTCAAGGCCAAGCAGGCCAAGATGGCGCCCTCCAGA
ATG
GACAGCCTTCGGGGCCAGACAGACCTGATGGCTGAGAGGCTGGAAGATGAGGAGCAGTTGGCCCACC
AG
TACGAGACCATCATGGATGAGTGTGGCCATGGCCGCTTCCAGTGGATCCTCTTTTTCGTCTTGGGTTT
G
GCCCTGATGGCCGATGGGGTGGAAGTGTTCGTGGTGAGTTTTGCCCTGCCCAGTGCAGAGAAGGACATG
TGT
CTGTCCAGTTCCAAAAAAGGAATGCTAGGGATGATAGTCTACTTGGGAATGATGGCGGGCGCCTTCA
TC
CTGGGAGGCCTGGCTGATAAGCTGGGAAGGAAGCGAGTCCTCAGCATGTCTCTGGCCGTCAATGCCTC
C
TTCGCCTCCCTCTCTTCCTTCGTGCAGGGATATGGAGCCTTCCTCTTCTGCCGACTCATCTCAGGCATC
GG
T
ATTGGGGGTGCTCTACCGATTGTTTTTGCCTATTTTTCTGAATTCTTGTCTCGGGAGAAGCGAGGAG
AA
CACCTCAGTTGGCTGGGCATCTTCTGGATGACTGGGGGCCTGTACGCATCTGCCATGGCCTGGAGCAT
C
ATCCCACACTATGGCTGGGGCTTCAGCATGGGGACCAATTACCACTTCCATAGCTGGAGAGTGTTTGTC
ATC
GTCTGTGCTCTGCCCTGCACCGTGTCCATGGTGGCCCTGAAGTTCATGCCAGAGAGCCCAAGGTTTC
TG
CTAGAGATGGGCAAACATGATGAAGCCTGGATGATTCTCAAGCAAGTCCATGACACCAACATGAGAGC
T
AAGGGGACCCCAGAGAAAGTGTTCACGGTTTCCAACATCAAAACTCCCAAGCAAATGGATGAATTCATT
GAG
ATCCAAAGTTCAACAGGAACCTGGTACCAGCGCTGGCTGGTCAGATTCAAGACCATTTTCAAGCAGG
TC
TGGGATAATGCCCTGTACTGTGTGATGGGGCCCTACAGAATGAATACACTGATTCTGGCCGTGGTTTG
G
TTTGCCATGGCATTCAGTTACTATGGACTGACAGTTTGGTTTCCTGATATGATCCGCTATTTTCAAGAT
GAA
GAATACAAGTCTAAAATGAAGGTGTTTTTTGGTGAGCATGTGTACGGCGCCACAATCAACTTCACGA
TG
GAAAATCAGATCCACCAACATGGGAAACTTGTGAATGATAAGTTCACAAGAATGTACTTTAAACATGT
A
CTCTTTGAGGACACATTCTTTGACGAGTGCTATTTTGAAGACGTAACATCAACAGATACCTACTTCAAA
AAT
TGTACCATTGAATCAACCATCTTTTACAACACAGACCTCTACGAGCACAAGTTCATCAACTGTCGGT
TT
ATCAACTCCACCTTCCTGGAGCAGAAGGAGGGCTGCCACATGGACTTGGAGCAAGATAATGACTTCCT
G
ATTTACCTCGTCAGCTTCCTGGGCAGCCTGTCTGTCTTACCCGGGAACATCATTTCTGCCCTGCTCATG
GAT
AGAATTGGAAGGCTCAAGATGATTGGTGGCTCCATGCTAATCTCTGCAGTCTGCTGCTTCTTCCTGT
TT
TTTGGCAACAGTGAGTCTGCAATGATCGGCTGGCAGTGCCTGTTCTGTGGGACAAGCATTGCAGCCTG
G
AATGCTCTGGATGTGATCACAGTGGAGCTGTATCCCACCAACCAGAGAGCAACAGCCTTCGGCATTCTC
AAT
GGATTATGCAAATTTGGCGCCATCCTGGGAAACACCATCTTTGCTTCTTTTGTTGGGATAACCAAAG
TG
GTCCCCATCCTTCTGGCTGCTGCTTCTCTGGTTGGGGGTGGCCTGATTGCCCTTCGACTGCCAGAGAC
T
CGAGAACAGGTCCTGATGTGA


Translation (683 aa):
MDDYKYQDNYGGYAPSDGYYRGNESNPEEDAQSDVTEGHDEEDEIYEGEYQGIPHPDDVKAKQAKMAPSR
M
DSLRGQTDLMAERLEDEEQLAHQYETIMDECGHGRFQWILFFVLGLALMADGVEVFVVSFALPSAEKDM
C
LSSSKKGML
GMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNASFASLSSFVQGYGAFLFCRLISGI
G
IGGALPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGLYASAMAWSIIPHYGWGFSMGTNYHFHSWRVFV
I
VCALPCTVSMVALKFMPESPRFLLE
MGKHDEAWMILKQVHDTNMRAKGTPEKVFTVSNIKTPKQMDEFI
E
IQSSTGTWYQRWLVRFKTIFKQ
VWDNALYCVMGPYRMNTLILAVVWFAMAFSYYGLTVWFPDMIRYFQD
E
EYKSKMKVFFGEHVYGATINFTMENQIHQHGKLVND
KFTRMYFKHVLFEDTFFDECYFEDVTSTDTYFK
N
CTIESTIFYNT
DLYEHKFINCRFINSTFLEQKEGCHMDLEQDNDFLIYLVSFLGSLSVLPGNIISALLM
D
RIGRLKMI
GGSMLISAVCCFFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGIL
N
GLCKFGAILGNTIFASFVGITKVVPILLAAASLVGGGLIALRLPETREQVLM




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser