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Report for CCDS10812.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10812.2 Public Homo sapiens 16 CMTM1 24 110 108 CCDS HistoryNCBI Gene:113540Re-query CCDS DB by CCDS ID:10812.2Re-query CCDS DB by GeneID:113540See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10812.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379500.7 ENSP00000368814.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379500.7Link to Ensembl Protein Viewer:ENSP00000368814.2Re-query CCDS DB by Nucleotide ID:ENST00000379500Re-query CCDS DB by Protein ID:ENSP00000368814
Original member Current member NCBI NM_052999.4 NP_443725.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052999.4Link to Protein Sequence:NP_443725.3Re-query CCDS DB by Nucleotide ID:NM_052999Re-query CCDS DB by Protein ID:NP_443725Link to BLAST:NP_443725.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443725.3 286 Q8IZ96-17 286 100% 0 0

Chromosomal Locations for CCDS 10812.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 66566514 66566945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66569936 66570094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66577104 66577202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66578831 66579001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGATCCTGAACACGCCAAACCTGAGTCATCCGAGGCACCTTCAGGGAACTTGAAACAACCGGAGACTG
CCGCAGCCCTGGCAAGTAGCGGCAGCGTAGTGAGTTCTGTACCCAAGGCACAGCGCAACATCTCAGCGAA
GACCGCACCCCGGAAGCACCCCGCAGTCTCAATTCGCAGTGCGCAGTCCGCAGCCGCCGCACGTCCCCAA
GGCAGTGAGGGCACCGCACCCTCAAGGAAAGCCACCACACGCCCACCCCCAAAGCCCACACTCCCACCCC
CCACGCCCTCTGCACACACTGAATCCAAACTCTTAAATGAGATGGCGATCAAAGAGCGCGTGGAGGGCCG
AGCCAAAGTCCCGTACAAATTCAGGGACAGCCTCAAACGTTTCTCCTTCTCGCCCACTGGAATGTTGAAG
ATCCTGAGACTGAGTCTTATCTTAGGAGCATTAGCTTGTTTCATCATCACCCAAGCCAATGAGTCATTTA
TAACAATCACAAGTCTGGAAATCTGCATTGTCGTTTTTTTTATTCTAATATATGTGCTAACCCTTCACCA
CTTGCTGACCTATTTACATTGGCCCTTACTTGATCTTACCAACAGTATCATTACAGCTGTGTTCCTTTCA
GTAGTTGCCATCTTGGCCATGCAAGAAAAGAAAAGAAGGCATTTACTCTATGTCGGGGGGTCCCTGTGTC
TCACAGCGGTAATCGTGTGTTGCATCGATGCGTTTGTGGTCACCACGAAGATGAGGACCAACTTGAAAAG
ATTCCTGGGAGTCGAAGTTGAAAGGAAGCTTTCCCCCGCCAAGGACGCCTACCCCGAAACCGGCCCCGAC
GCCCCGCAGAGGCCCGCCTGA

Translation (286 aa):
MDPEHAKPESSEAPSGNLKQPETAAALASSGSVVSSVPKAQRNISAKTAPRKHPAVSIRSAQSAAAARPQ
GSEGTAPSRKATTRPPPKPTLPPPTPSAHTESKLLNEMAIKERVEGRAKVPYKFRDSLKRFSFSPTGMLK
ILRLSLILGALACFIITQANESFITITSLEICIVVFFILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLS
VVAILAMQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPD
APQRPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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