NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11007.1 Public Homo sapiens 17 SCARF1 24 110 108 CCDS HistoryNCBI Gene:8578Re-query CCDS DB by CCDS ID:11007.1Re-query CCDS DB by GeneID:8578See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11007.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263071.9 ENSP00000263071.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263071.9Link to Ensembl Protein Viewer:ENSP00000263071.4Re-query CCDS DB by Nucleotide ID:ENST00000263071Re-query CCDS DB by Protein ID:ENSP00000263071
Original member Current member NCBI NM_003693.4 NP_003684.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003693.4Link to Protein Sequence:NP_003684.2Re-query CCDS DB by Nucleotide ID:NM_003693Re-query CCDS DB by Protein ID:NP_003684Link to BLAST:NP_003684.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003684.2 830 Q14162-1 830 100% 0 0

Chromosomal Locations for CCDS 11007.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 1634758 1635617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1636709 1636855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1636941 1637062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1638806 1638926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1639639 1639742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1639912 1640040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1640448 1640666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1643442 1643967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1644834 1644935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1645178 1645239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1645597 1645697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2493 nt):
ATGGGGCTGGGGCTGCTGCTCCCGCTGCTGCTGCTCTGGACTCGGGGGACTCAGGGGTCCGAGCTGGACC
CCAAAGGGCAGCACGTCTGTGTGGCCAGCAGCCCCTCTGCTGAGCTGCAGTGCTGCGCAGGCTGGAGGCA
GAAGGATCAAGAATGCACCATCCCCATCTGTGAGGGGCCGGACGCCTGCCAGAAAGACGAGGTGTGTGTG
AAGCCGGGCCTCTGTCGATGCAAGCCTGGATTCTTTGGGGCCCACTGCAGCTCCCGCTGCCCGGGCCAGT
ACTGGGGCCCCGACTGCCGTGAGAGCTGCCCCTGCCACCCGCACGGCCAGTGCGAGCCAGCCACGGGCGC
GTGCCAGTGCCAGGCCGACCGCTGGGGAGCCCGCTGCGAGTTCCCGTGCGCCTGCGGCCCCCACGGGCGC
TGCGACCCCGCGACCGGCGTGTGCCACTGCGAACCCGGCTGGTGGTCGTCCACGTGCCGCCGCCCGTGCC
AGTGCAACACCGCGGCGGCGCGCTGCGAGCAGGCCACGGGCGCCTGCGTGTGCAAGCCGGGCTGGTGGGG
GCGCCGCTGCAGCTTCCGCTGCAACTGCCACGGCTCCCCGTGCGAGCAGGACTCCGGCCGCTGCGCCTGC
CGGCCGGGCTGGTGGGGTCCCGAATGCCAGCAGCAGTGCGAGTGTGTGCGGGGCCGCTGCAGCGCCGCCT
CCGGCGAGTGCACCTGCCCGCCCGGCTTCCGCGGAGCGCGCTGCGAGCTGCCCTGCCCGGCAGGCAGCCA
CGGGGTGCAGTGCGCACACAGCTGTGGCCGCTGCAAACACAATGAGCCGTGCTCTCCAGACACAGGCAGC
TGTGAGTCCTGCGAGCCGGGCTGGAACGGGACCCAGTGCCAGCAGCCCTGCCTGCCTGGCACCTTTGGCG
AGAGCTGCGAACAGCAGTGCCCTCACTGCCGACATGGGGAGGCCTGTGAGCCAGATACTGGCCACTGTCA
GCGCTGTGACCCTGGCTGGCTGGGGCCCAGGTGTGAAGACCCCTGCCCCACTGGTACCTTTGGGGAAGAC
TGTGGCTCTACCTGCCCCACCTGTGTTCAGGGGTCCTGTGATACTGTGACAGGGGACTGTGTCTGCAGTG
CCGGCTACTGGGGGCCCAGCTGCAACGCCTCCTGCCCAGCCGGTTTCCATGGAAACAACTGCTCAGTTCC
TTGTGAATGCCCAGAGGGACTCTGCCACCCTGTCTCTGGGTCCTGCCAGCCAGGCTCTGGCAGTCGGGAC
ACTGCCCTCATCGCGGGCAGCCTTGTGCCTCTGCTGCTGCTCTTCCTGGGCCTTGCCTGCTGTGCCTGCT
GCTGCTGGGCCCCCCGATCAGACCTCAAGGACAGGCCAGCGAGAGATGGAGCTACCGTGTCCAGGATGAA
GCTGCAGGTCTGGGGGACACTGACCAGCTTGGGCTCCACGCTGCCCTGCCGTTCCCTCAGCTCCCACAAG
CTACCCTGGGTGACAGTCTCACATCACGACCCGGAGGTCCCCTTCAACCACAGCTTCATCGAGCCGCCCT
CTGCCGGCTGGGCCACTGATGACTCCTTCTCATCCGATCCTGAGTCTGGAGAGGCAGATGAGGTTCCTGC
CTACTGTGTGCCACCCCAAGAAGGGATGGTCCCTGTGGCCCAGGCAGGGTCGTCAGAGGCCAGCCTGGCT
GCAGGTGCTTTCCCGCCCCCTGAGGACGCCTCCACGCCATTCGCCATCCCGCGCACCTCCAGCCTAGCTC
GGGCCAAGCGGCCATCGGTCTCCTTCGCGGAAGGTACCAAGTTTGCACCACAGAGTCGCCGAAGCTCAGG
GGAGCTCTCCAGCCCGCTCCGAAAGCCCAAGAGGCTCTCCCGGGGGGCGCAGTCGGGTCCTGAGGGCCGG
GAAGCCGAAGAGTCCACAGGCCCAGAGGAAGCAGAAGCCCCCGAGTCCTTTCCGGCGGCTGCCAGTCCCG
GGGATTCAGCCACTGGCCACCGGCGGCCCCCACTTGGTGGCCGGACAGTGGCTGAGCACGTGGAAGCCAT
TGAGGGCAGCGTCCAGGAGAGCTCGGGCCCTGTGACCACGATCTACATGCTGGCAGGGAAGCCCCGCGGA
TCCGAAGGCCCTGTCCGCTCTGTCTTCCGCCATTTTGGTAGCTTCCAGAAAGGCCAGGCGGAAGCCAAGG
TCAAGAGGGCCATCCCTAAGCCTCCGCGCCAGGCCCTGAATCGGAAAAAGGGCAGCCCTGGCCTTGCCTC
TGGCTCTGTCGGCCAGAGCCCCAACTCAGCCCCAAAAGCTGGGCTTCCTGGGGCCACAGGGCCTATGGCA
GTCAGACCAGAGGAAGCGGTCCGGGGGCTGGGGGCTGGCACCGAGAGTTCAAGGAGAGCCCAGGAGCCAG
TCTCTGGCTGTGGCTCCCCAGAACAGGATCCCCAGAAGCAGGCTGAAGAGGAAAGGCAGGAGGAACCTGA
GTATGAGAATGTTGTACCCATCTCCAGGCCACCAGAACCCTGA

Translation (830 aa):
MGLGLLLPLLLLWTRGTQGSELDPKGQHVCVASSPSAELQCCAGWRQKDQECTIPICEGPDACQKDEVCV
KPGLCRCKPGFFGAHCSSRCPGQYWGPDCRESCPCHPHGQCEPATGACQCQADRWGARCEFPCACGPHGR
CDPATGVCHCEPGWWSSTCRRPCQCNTAAARCEQATGACVCKPGWWGRRCSFRCNCHGSPCEQDSGRCAC
RPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGS
CESCEPGWNGTQCQQPCLPGTFGESCEQQCPHCRHGEACEPDTGHCQRCDPGWLGPRCEDPCPTGTFGED
CGSTCPTCVQGSCDTVTGDCVCSAGYWGPSCNASCPAGFHGNNCSVPCECPEGLCHPVSGSCQPGSGSRD
TALIAGSLVPLLLLFLGLACCACCCWAPRSDLKDRPARDGATVSRMKLQVWGTLTSLGSTLPCRSLSSHK
LPWVTVSHHDPEVPFNHSFIEPPSAGWATDDSFSSDPESGEADEVPAYCVPPQEGMVPVAQAGSSEASLA
AGAFPPPEDASTPFAIPRTSSLARAKRPSVSFAEGTKFAPQSRRSSGELSSPLRKPKRLSRGAQSGPEGR
EAEESTGPEEAEAPESFPAAASPGDSATGHRRPPLGGRTVAEHVEAIEGSVQESSGPVTTIYMLAGKPRG
SEGPVRSVFRHFGSFQKGQAEAKVKRAIPKPPRQALNRKKGSPGLASGSVGQSPNSAPKAGLPGATGPMA
VRPEEAVRGLGAGTESSRRAQEPVSGCGSPEQDPQKQAEEERQEEPEYENVVPISRPPEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH