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Report for CCDS13106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13106.1 Public Homo sapiens 20 LAMP5 24 110 108 CCDS HistoryNCBI Gene:24141Re-query CCDS DB by CCDS ID:13106.1Re-query CCDS DB by GeneID:24141See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13106.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246070.3 ENSP00000246070.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246070.3Link to Ensembl Protein Viewer:ENSP00000246070.2Re-query CCDS DB by Nucleotide ID:ENST00000246070Re-query CCDS DB by Protein ID:ENSP00000246070
Original member Current member NCBI NM_012261.4 NP_036393.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012261.4Link to Protein Sequence:NP_036393.1Re-query CCDS DB by Nucleotide ID:NM_012261Re-query CCDS DB by Protein ID:NP_036393Link to BLAST:NP_036393.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036393.1 280 Q9UJQ1-1 280 100% 0 0

Chromosomal Locations for CCDS 13106.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 9514853 9514916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9515453 9515625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9516000 9516131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9516256 9516361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9518040 9518228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9529642 9529820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGGATCTCCAAGGAAGAGGGGTCCCCAGCATCGACAGACTTCGAGTTCTCCTGATGTTGTTCCATACAA
TGGCTCAAATCATGGCAGAACAAGAAGTGGAAAATCTCTCAGGCCTTTCCACTAACCCTGAAAAAGATAT
ATTTGTGGTGCGGGAAAATGGGACGACGTGTCTCATGGCAGAGTTTGCAGCCAAATTTATTGTACCTTAT
GATGTGTGGGCCAGCAACTACGTAGATCTGATCACAGAACAGGCCGATATCGCATTGACCCGGGGAGCTG
AGGTGAAGGGCCGCTGTGGCCACAGCCAGTCGGAGCTGCAAGTGTTCTGGGTGGATCGCGCATATGCACT
CAAAATGCTCTTTGTAAAGGAAAGCCACAACATGTCCAAGGGACCTGAGGCGACTTGGAGGCTGAGCAAA
GTGCAGTTTGTCTACGACTCCTCGGAGAAAACCCACTTCAAAGACGCAGTCAGTGCTGGGAAGCACACAG
CCAACTCGCACCACCTCTCTGCCTTGGTCACCCCCGCTGGGAAGTCCTATGAGTGTCAAGCTCAACAAAC
CATTTCACTGGCCTCTAGTGATCCGCAGAAGACGGTCACCATGATCCTGTCTGCGGTCCACATCCAACCT
TTTGACATTATCTCAGATTTTGTCTTCAGTGAAGAGCATAAATGCCCAGTGGATGAGCGGGAGCAACTGG
AAGAAACCTTGCCCCTGATTTTGGGGCTCATCTTGGGCCTCGTCATCATGGTAACACTCGCGATTTACCA
CGTCCACCACAAAATGACTGCCAACCAGGTGCAGATCCCTCGGGACAGATCCCAGTATAAGCACATGGGC
TAG

Translation (280 aa):
MDLQGRGVPSIDRLRVLLMLFHTMAQIMAEQEVENLSGLSTNPEKDIFVVRENGTTCLMAEFAAKFIVPY
DVWASNYVDLITEQADIALTRGAEVKGRCGHSQSELQVFWVDRAYALKMLFVKESHNMSKGPEATWRLSK
VQFVYDSSEKTHFKDAVSAGKHTANSHHLSALVTPAGKSYECQAQQTISLASSDPQKTVTMILSAVHIQP
FDIISDFVFSEEHKCPVDEREQLEETLPLILGLILGLVIMVTLAIYHVHHKMTANQVQIPRDRSQYKHMG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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