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Report for CCDS13137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13137.1 Public Homo sapiens 20 SEC23B 24 110 108 CCDS HistoryNCBI Gene:10483Re-query CCDS DB by CCDS ID:13137.1Re-query CCDS DB by GeneID:10483See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13137.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262544.6 ENSP00000262544.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000262544.6Link to Ensembl Protein Viewer:ENSP00000262544.2Re-query CCDS DB by Nucleotide ID:ENST00000262544Re-query CCDS DB by Protein ID:ENSP00000262544
Original member Current member EBI ENST00000336714.8 ENSP00000338844.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336714.8Link to Ensembl Protein Viewer:ENSP00000338844.3Re-query CCDS DB by Nucleotide ID:ENST00000336714Re-query CCDS DB by Protein ID:ENSP00000338844
Original member Current member EBI ENST00000377465.6 ENSP00000366685.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377465.6Link to Ensembl Protein Viewer:ENSP00000366685.1Re-query CCDS DB by Nucleotide ID:ENST00000377465Re-query CCDS DB by Protein ID:ENSP00000366685
Original member Current member EBI ENST00000650089.1 ENSP00000497473.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000650089.1Link to Ensembl Protein Viewer:ENSP00000497473.1Re-query CCDS DB by Nucleotide ID:ENST00000650089Re-query CCDS DB by Protein ID:ENSP00000497473
Original member Current member NCBI NM_001172745.3 NP_001166216.1 Accepted alive Link to Nucleotide Sequence:NM_001172745.3Link to Protein Sequence:NP_001166216.1Re-query CCDS DB by Nucleotide ID:NM_001172745Re-query CCDS DB by Protein ID:NP_001166216Link to BLAST:NP_001166216.1
Original member Current member NCBI NM_006363.6 NP_006354.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006363.6Link to Protein Sequence:NP_006354.2Re-query CCDS DB by Nucleotide ID:NM_006363Re-query CCDS DB by Protein ID:NP_006354Link to BLAST:NP_006354.2
Original member Current member NCBI NM_032985.6 NP_116780.1 Accepted alive Link to Nucleotide Sequence:NM_032985.6Link to Protein Sequence:NP_116780.1Re-query CCDS DB by Nucleotide ID:NM_032985Re-query CCDS DB by Protein ID:NP_116780Link to BLAST:NP_116780.1
Original member Current member NCBI NM_032986.5 NP_116781.1 Accepted alive Link to Nucleotide Sequence:NM_032986.5Link to Protein Sequence:NP_116781.1Re-query CCDS DB by Nucleotide ID:NM_032986Re-query CCDS DB by Protein ID:NP_116781Link to BLAST:NP_116781.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166216.1 767 Q15437 767 100% 0 0
NP_006354.2 767 Q15437 767 100% 0 0
NP_116780.1 767 Q15437 767 100% 0 0
NP_116781.1 767 Q15437 767 100% 0 0

Chromosomal Locations for CCDS 13137.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 18510836 18511056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18512225 18512282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18515650 18515736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18524433 18524669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18524935 18525020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18525788 18525932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18526373 18526531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18527496 18527611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18530680 18530803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18532664 18532744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18535653 18535742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18542296 18542402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18543019 18543172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18545956 18546033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18548609 18548770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18551089 18551175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18554235 18554390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18555108 18555173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 18560651 18560740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2304 nt):
ATGGCGACATACCTGGAGTTCATCCAGCAGAATGAAGAACGGGATGGTGTGCGTTTTAGTTGGAACGTGT
GGCCTTCCAGCCGGCTGGAGGCTACAAGAATGGTTGTACCCCTGGCTTGTCTCCTTACTCCTTTGAAAGA
ACGTCCAGACCTACCTCCTGTACAATATGAACCTGTGCTTTGCAGCAGGCCAACTTGTAAAGCTGTTCTC
AACCCACTTTGTCAGGTTGATTATCGAGCAAAACTTTGGGCCTGTAATTTCTGTTTTCAAAGAAATCAGT
TTCCTCCAGCTTATGGAGGCATATCTGAGGTGAATCAACCTGCCGAATTGATGCCCCAGTTTTCTACAAT
TGAGTACGTGATACAGCGAGGTGCTCAGTCCCCTCTGATCTTTCTCTATGTGGTTGACACATGCCTGGAG
GAAGATGACCTTCAAGCACTCAAAGAGTCCCTGCAGATGTCCCTGAGTCTTCTTCCTCCAGATGCTCTGG
TGGGTCTGATCACATTTGGAAGGATGGTGCAGGTTCATGAGCTAAGCTGTGAAGGAATCTCCAAAAGTTA
TGTCTTCCGAGGGACCAAGGATTTAACTGCAAAGCAAATACAGGATATGTTGGGCCTGACCAAGCCAGCC
ATGCCCATGCAGCAAGCACGACCTGCACAACCACAGGAGCACCCTTTTGCTTCAAGCAGATTTCTGCAGC
CTGTTCACAAGATTGATATGAACCTCACTGATCTTCTTGGGGAGCTACAGAGGGACCCATGGCCAGTAAC
TCAGGGGAAGAGACCTTTGCGATCCACTGGTGTGGCTTTGTCCATTGCTGTTGGCTTGCTGGAGGGCACT
TTTCCAAACACAGGAGCCAGGATCATGCTGTTTACTGGAGGTCCCCCTACCCAAGGGCCTGGCATGGTGG
TTGGAGATGAATTAAAGATTCCTATTCGTTCTTGGCATGATATTGAGAAAGATAATGCACGATTCATGAA
AAAGGCAACCAAGCACTATGAGATGCTTGCTAATCGAACAGCTGCAAATGGTCACTGCATTGATATTTAT
GCTTGTGCCCTTGATCAAACTGGACTTTTGGAGATGAAGTGTTGTGCAAATCTTACTGGAGGCTACATGG
TAATGGGAGATTCTTTCAACACTTCTCTCTTCAAGCAGACATTCCAAAGAATCTTTACTAAAGATTTTAA
TGGAGATTTCCGAATGGCATTTGGTGCTACTTTGGACGTAAAGACCTCTCGGGAACTGAAGATTGCAGGA
GCCATTGGTCCATGCGTATCTCTGAATGTGAAAGGACCGTGTGTGTCAGAAAATGAGCTTGGTGTTGGTG
GCACGAGTCAGTGGAAAATCTGTGGCCTAGATCCTACATCTACACTTGGCATCTATTTTGAAGTTGTCAA
TCAGCACAACACCCCGATCCCCCAAGGAGGCAGAGGAGCCATCCAGTTTGTCACGCATTATCAGCACTCC
AGCACCCAGAGACGCATCCGCGTGACCACCATCGCCCGAAATTGGGCAGATGTACAGAGTCAGCTCAGGC
ACATAGAAGCAGCATTTGACCAGGAGGCTGCGGCAGTGTTGATGGCACGGCTTGGGGTGTTCCGAGCGGA
GTCAGAGGAGGGGCCCGATGTGCTCCGGTGGCTGGACCGACAACTCATCCGACTGTGTCAAAAGTTTGGA
CAGTATAACAAAGAAGACCCCACTTCTTTTAGGTTATCAGATTCCTTTTCTCTATATCCTCAGTTTATGT
TCCATCTGAGAAGATCTCCATTTCTTCAAGTGTTTAACAACAGTCCTGATGAGTCGTCATATTACAGACA
TCATTTTGCCCGGCAGGACCTGACCCAGTCCCTCATCATGATCCAGCCCATTCTCTACTCTTACTCCTTT
CATGGGCCACCAGAGCCAGTACTCTTGGATAGCAGCAGCATTCTAGCTGACAGAATTTTGCTGATGGATA
CTTTCTTTCAAATTGTCATTTATCTTGGTGAGACCATAGCCCAGTGGCGTAAAGCTGGCTACCAGGACAT
GCCCGAGTATGAAAACTTCAAGCACCTTCTGCAGGCACCACTGGATGATGCTCAAGAAATTCTGCAAGCA
CGCTTCCCGATGCCACGTTACATCAACACGGAGCATGGAGGCAGTCAGGCTCGATTCCTTTTGTCCAAAG
TGAACCCATCTCAGACACACAATAACCTGTATGCTTGGGGACAGGAAACTGGAGCACCCATCCTAACTGA
TGATGTTAGCCTGCAGGTGTTCATGGACCATTTGAAGAAGCTGGCTGTCTCCAGTGCCTGTTAA

Translation (767 aa):
MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAVL
NPLCQVDYRAKLWACNFCFQRNQFPPAYGGISEVNQPAELMPQFSTIEYVIQRGAQSPLIFLYVVDTCLE
EDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQDMLGLTKPA
MPMQQARPAQPQEHPFASSRFLQPVHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGT
FPNTGARIMLFTGGPPTQGPGMVVGDELKIPIRSWHDIEKDNARFMKKATKHYEMLANRTAANGHCIDIY
ACALDQTGLLEMKCCANLTGGYMVMGDSFNTSLFKQTFQRIFTKDFNGDFRMAFGATLDVKTSRELKIAG
AIGPCVSLNVKGPCVSENELGVGGTSQWKICGLDPTSTLGIYFEVVNQHNTPIPQGGRGAIQFVTHYQHS
STQRRIRVTTIARNWADVQSQLRHIEAAFDQEAAAVLMARLGVFRAESEEGPDVLRWLDRQLIRLCQKFG
QYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSF
HGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQA
RFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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