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Report for CCDS13697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13697.1 Public Homo sapiens 21 HSF2BP 24 110 108 CCDS HistoryNCBI Gene:11077Re-query CCDS DB by CCDS ID:13697.1Re-query CCDS DB by GeneID:11077See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13697.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000291560.7 ENSP00000291560.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000291560.7Link to Ensembl Protein Viewer:ENSP00000291560.2Re-query CCDS DB by Nucleotide ID:ENST00000291560Re-query CCDS DB by Protein ID:ENSP00000291560
Original member Current member NCBI NM_007031.2 NP_008962.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007031.2Link to Protein Sequence:NP_008962.1Re-query CCDS DB by Nucleotide ID:NM_007031Re-query CCDS DB by Protein ID:NP_008962Link to BLAST:NP_008962.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008962.1 334 O75031-1 334 100% 0 0

Chromosomal Locations for CCDS 13697.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 43529754 43529962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43592225 43592328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43613830 43613947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43630322 43630454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43633272 43633421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43644289 43644392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43656587 43656737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 43658061 43658096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGGCGAAGCGGGCGCCGCTGAGGAGGCCTGCCGGCACATGGGAACTAAAGAGGAATTTGTTAAAGTCA
GA
AAGAAGGATCTGGAACGGCTGACAACTGAAGTGATGCAAATACGGGACTTCTTACCCAGAATACTAAA
T
GGGGAGGTGCTGGAGAGCTTCCAGAAATTAAAGATTGTAGAAAAAAACCTGGAAAGGAAAGAGCAAGAA
TTA
GAGCAGCTGAAAATGGATTGTGAGCACTTTAAAGCCCGCCTGGAAACCGTGCAGGCCGACAACATAA
GA
GAGAAGAAGGAGAAACTGGCTCTTCGACAGCAGTTGAATGAAGCGAAGCAGCAACTCCTGCAGCAGGC
A
GAGTATTGTACAGAAATGGGAGCAGCAGCGTGTACCCTCTTGTGGGGTGTCTCCAGCAGTGAGGAAGTC
GTC
AAGGCCATTTTGGGAGGAGATAAAGCTTTGAAGTTTTTCAGCATCACTGGTCAAACAATGGAGAGTT
TT
GTGAAGTCGTTAGACGGTGATGTCCAGGAGCTGGATTCGGATGAAAGTCAGTTTGTTTTCGCTCTGGC
T
GGAATTGTCACGAATGTTGCTGCTATAGCATGTGGTCGTGAATTCTTGGTTAATTCAAGCCGGGTGCTC
TTG
GACACCATATTGCAGCTTCTGGGAGACTTGAAGCCAGGACAGTGTACCAAACTCAAAGTGCTAATGC
TG
ATGTCCCTATACAATGTAAGCATCAATTTGAAAGGCTTGAAATACATCAGCGAGAGTCCAGGATTCAT
C
CCTTTGCTGTGGTGGCTTTTGAGTGATCCAGATGCAGAGGTGTGCCTTCATGTACTGAGGCTTGTCCAG
TCT
GTGGTTCTGGAACCTGAAGTCTTCTCCAAGTCGGCCTCTGAGTTCCGGAGCTCCCTGCCCCTGCAAC
GC
ATCCTGGCAATGTCCAAGAGCCGCAACCCCCGCCTGCAAACCGCAGCCCAGGAGCTCCTGGAAGATCT
C
CGCACTCTGGAGCATAATGTGTAG


Translation (334 aa):
MGEAGAAEEACRHMGTKEEFVKVRKKDLERLTTEVMQIRDFLPRILNGEVLESFQKLKIVEKNLERKEQE
L
EQLKMDCEHFKARLETVQADNIREKK
EKLALRQQLNEAKQQLLQQAEYCTEMGAAACTLLWGVSSSEEV
V
KAILGG
DKALKFFSITGQTMESFVKSLDGDVQELDSDESQFVFALAGIVTNVAAIACGREFLVNSSRVL
L
DTILQLLGDLKPGQCTKLK
VLMLMSLYNVSINLKGLKYISESPGFIPLLWWLLSDPDAEVCLHVLRLVQ
S
VVLEPEVFSKSASEFRSSLPLQRILAMSKSRNPRLQTAAQELLEDLRTLEHNV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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