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Report for CCDS1379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1379.1 Public Homo sapiens 1 RO60 24 110 108 CCDS HistoryNCBI Gene:6738Re-query CCDS DB by CCDS ID:1379.1Re-query CCDS DB by GeneID:6738See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1379.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367441.1 ENSP00000356411.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367441.1Link to Ensembl Protein Viewer:ENSP00000356411.1Re-query CCDS DB by Nucleotide ID:ENST00000367441Re-query CCDS DB by Protein ID:ENSP00000356411
Original member Current member EBI ENST00000367446.7 ENSP00000356416.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367446.7Link to Ensembl Protein Viewer:ENSP00000356416.3Re-query CCDS DB by Nucleotide ID:ENST00000367446Re-query CCDS DB by Protein ID:ENSP00000356416
Original member Current member EBI ENST00000400968.7 ENSP00000383752.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400968.7Link to Ensembl Protein Viewer:ENSP00000383752.2Re-query CCDS DB by Nucleotide ID:ENST00000400968Re-query CCDS DB by Protein ID:ENSP00000383752
Original member Current member NCBI NM_001173524.2 NP_001166995.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001173524.2Link to Protein Sequence:NP_001166995.1Re-query CCDS DB by Nucleotide ID:NM_001173524Re-query CCDS DB by Protein ID:NP_001166995Link to BLAST:NP_001166995.1
Original member Current member NCBI NM_004600.5 NP_004591.2 Accepted alive Link to Nucleotide Sequence:NM_004600.5Link to Protein Sequence:NP_004591.2Re-query CCDS DB by Nucleotide ID:NM_004600Re-query CCDS DB by Protein ID:NP_004591Link to BLAST:NP_004591.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166995.1 538 P10155-1 538 100% 0 0
NP_004591.2 538 P10155-1 538 100% 0 0

Chromosomal Locations for CCDS 1379.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 193069055 193069634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193075820 193076040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193076501 193076647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193076913 193077050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193081364 193081480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193082186 193082299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193082562 193082708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 193084579 193084731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGGAGGAATCTGTAAACCAAATGCAGCCACTGAATGAGAAGCAGATAGCCAATTCTCAGGATGGATATG
TATGGCAAGTCACTGACATGAATCGACTACACCGGTTCTTATGTTTCGGTTCTGAAGGTGGGACTTATTA
TATCAAAGAACAGAAGTTGGGCCTTGAAAATGCTGAAGCTTTAATTAGATTGATTGAAGATGGCAGAGGA
TGTGAAGTGATACAAGAAATAAAGTCATTTAGTCAAGAAGGCAGAACCACAAAGCAAGAGCCTATGCTCT
TTGCACTTGCCATTTGTTCCCAGTGCTCCGACATAAGCACAAAACAAGCAGCATTTAAAGCTGTTTCTGA
AGTTTGTCGCATTCCTACCCATCTCTTTACTTTTATCCAGTTTAAGAAAGATCTGAAGGAAAGCATGAAA
TGTGGCATGTGGGGTCGTGCCCTCCGGAAGGCTATAGCGGACTGGTACAATGAGAAAGGTGGCATGGCCC
TTGCTCTGGCAGTTACAAAATATAAACAGAGAAATGGCTGGTCTCACAAAGATCTATTAAGATTGTCACA
TCTTAAACCTTCCAGTGAAGGACTTGCAATTGTGACCAAATATATTACAAAGGGCTGGAAAGAAGTTCAT
GAATTGTATAAAGAAAAAGCACTCTCTGTGGAGACTGAAAAATTATTAAAGTATCTGGAGGCTGTAGAGA
AAGTGAAGCGCACAAGAGATGAGCTAGAAGTCATTCATCTAATAGAAGAACATAGATTAGTTAGAGAACA
TCTTTTAACAAATCACTTAAAGTCTAAAGAGGTATGGAAGGCTTTGTTACAAGAAATGCCGCTTACTGCA
TTACTAAGGAATCTAGGAAAGATGACTGCTAATTCAGTACTTGAACCAGGAAATTCAGAAGTATCTTTAG
TATGTGAAAAACTGTGTAATGAAAAACTATTAAAAAAGGCTCGTATACATCCATTTCATATTTTGATCGC
ATTAGAAACTTACAAGACAGGTCATGGTCTCAGAGGGAAACTGAAGTGGCGCCCTGATGAAGAAATTTTG
AAAGCATTGGATGCTGCTTTTTATAAAACATTTAAGACAGTTGAACCAACTGGAAAACGTTTCTTACTAG
CTGTTGATGTCAGTGCTTCTATGAACCAAAGAGTTTTGGGTAGTATACTCAACGCTAGTACAGTTGCTGC
AGCAATGTGCATGGTTGTCACACGAACAGAAAAAGATTCTTATGTAGTTGCTTTTTCCGATGAAATGGTA
CCATGTCCAGTGACTACAGATATGACCTTACAACAGGTTTTAATGGCTATGAGTCAGATCCCAGCAGGTG
GAACTGATTGCTCTCTTCCAATGATCTGGGCTCAGAAGACAAACACACCTGCTGATGTCTTCATTGTATT
CACTGATAATGAGACCTTTGCTGGAGGTGTCCATCCTGCTATTGCTCTGAGGGAGTATCGAAAGAAAATG
GATATTCCAGCTAAATTGATTGTTTGTGGAATGACATCAAATGGTTTCACCATTGCAGACCCAGATGATA
GAGGCATGTTGGATATGTGCGGCTTTGATACTGGAGCTCTGGATGTAATTCGAAATTTCACATTAGATAT
GATTTAA

Translation (538 aa):
MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEALIRLIEDGRG
CEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCRIPTHLFTFIQFKKDLKESMK
CGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHKDLLRLSHLKPSSEGLAIVTKYITKGWKEVH
ELYKEKALSVETEKLLKYLEAVEKVKRTRDELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTA
LLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEIL
KALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPAIALREYRKKM
DIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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