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Report for CCDS14462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14462.1 Public Homo sapiens X PCDH11X 24 110 108 CCDS HistoryNCBI Gene:27328Re-query CCDS DB by CCDS ID:14462.1Re-query CCDS DB by GeneID:27328See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14462.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373097.5 ENSP00000362189.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373097.5Link to Ensembl Protein Viewer:ENSP00000362189.1Re-query CCDS DB by Nucleotide ID:ENST00000373097Re-query CCDS DB by Protein ID:ENSP00000362189
Original member Current member NCBI NM_032969.4 NP_116751.1 Accepted alive Link to Nucleotide Sequence:NM_032969.4Link to Protein Sequence:NP_116751.1Re-query CCDS DB by Nucleotide ID:NM_032969Re-query CCDS DB by Protein ID:NP_116751Link to BLAST:NP_116751.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116751.1 1337 Q9BZA7-3 1337 100% 0 0

Chromosomal Locations for CCDS 14462.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 91835505 91836044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 91876781 91879273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 92201375 92201455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 92387735 92387933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 92468299 92468322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 92618264 92618940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4014 nt):
ATGGACTTGTTGTCCGGGACGTACATTTTCGCGGTCCTGCTAGCATGCGTGGTGTTCCACTCTGGCGCCC
AG
GAGAAAAACTACACCATCCGAGAAGAAATGCCAGAAAACGTCCTGATAGGCGACTTGTTGAAAGACCT
T
AACTTGTCGCTGATTCCAAACAAGTCCTTGACAACTGCTATGCAGTTCAAGCTAGTGTACAAGACCGGA
GAT
GTGCCACTGATTCGAATTGAAGAGGATACTGGTGAGATCTTCACTACTGGCGCTCGCATTGATCGTG
AG
AAATTATGTGCTGGTATCCCAAGGGATGAGCATTGCTTTTATGAAGTGGAGGTTGCCATTTTGCCGGA
T
GAAATATTTAGACTGGTTAAGATACGTTTTCTGATAGAAGATATAAATGATAATGCACCATTGTTCCCA
GCA
ACAGTTATCAACATATCAATTCCAGAGAACTCGGCTATAAACTCTAAATATACTCTCCCAGCGGCTG
TT
GATCCTGACGTAGGAATAAACGGAGTTCAAAACTACGAACTAATTAAGAGTCAAAACATTTTTGGCCT
C
GATGTCATTGAAACACCAGAAGGAGACAAGATGCCACAACTGATTGTTCAAAAGGAGTTAGATAGGGAA
GAG
AAGGATACCTACGTGATGAAAGTAAAGGTTGAAGATGGTGGCTTTCCTCAAAGATCCAGTACTGCTA
TT
TTGCAAGTGAGTGTTACTGATACAAATGACAACCACCCAGTCTTTAAGGAGACAGAGATTGAAGTCAG
T
ATACCAGAAAATGCTCCTGTAGGCACTTCAGTGACACAGCTCCATGCCACAGATGCTGACATAGGTGAA
AAT
GCCAAGATCCACTTCTCTTTCAGCAATCTAGTCTCCAACATTGCCAGGAGATTATTTCACCTCAATG
CC
ACCACTGGACTTATCACAATCAAAGAACCACTGGATAGGGAAGAAACACCAAACCACAAGTTACTGGT
T
TTGGCAAGTGATGGTGGATTGATGCCAGCAAGAGCAATGGTGCTGGTAAATGTTACAGATGTCAATGAT
AAT
GTCCCATCCATTGACATAAGATACATCGTCAATCCTGTCAATGACACAGTTGTTCTTTCAGAAAATA
TT
CCACTCAACACCAAAATTGCTCTCATAACTGTGACGGATAAGGATGCGGACCATAATGGCAGGGTGAC
A
TGCTTCACAGATCATGAAATCCCTTTCAGATTAAGGCCAGTATTCAGTAATCAGTTCCTCCTGGAGACT
GCA
GCATATCTTGACTATGAGTCCACAAAAGAATATGCCATTAAATTACTGGCTGCAGATGCTGGCAAAC
CT
CCTTTGAATCAGTCAGCAATGCTCTTCATCAAAGTGAAAGATGAAAATGACAATGCTCCAGTTTTCAC
C
CAGTCTTTCGTAACTGTTTCTATTCCTGAGAATAACTCTCCTGGCATCCAGTTGACGAAAGTAAGTGCA
ATG
GATGCAGACAGTGGGCCTAATGCTAAGATCAATTACCTGCTAGGCCCTGATGCTCCACCTGAATTCA
GC
CTGGATTGTCGTACAGGCATGCTGACTGTAGTGAAGAAACTAGATAGAGAAAAAGAGGATAAATATTT
A
TTCACAATTCTGGCAAAAGATAACGGGGTACCACCCTTAACCAGCAATGTCACAGTCTTTGTAAGCATT
ATT
GATCAGAATGACAATAGCCCAGTTTTCACTCACAATGAATACAACTTCTATGTCCCAGAAAACCTTC
CA
AGGCATGGTACAGTAGGACTAATCACTGTAACTGATCCTGATTATGGAGACAATTCTGCAGTTACGCT
C
TCCATTTTAGATGAGAATGATGACTTCACCATTGATTCACAAACTGGTGTCATCCGACCAAATATTTCA
TTT
GATAGAGAAAAACAAGAATCTTACACTTTCTATGTAAAGGCTGAGGATGGTGGTAGAGTATCACGTT
CT
TCAAGTGCCAAAGTAACCATAAATGTGGTTGATGTCAATGACAACAAACCAGTTTTCATTGTCCCTCC
T
TCCAACTGTTCTTATGAATTGGTTCTACCGTCCACTAATCCAGGCACAGTGGTCTTTCAGGTAATTGCT
GTT
GACAATGACACTGGCATGAATGCAGAGGTTCGTTACAGCATTGTAGGAGGAAACACAAGAGATCTGT
TT
GCAATCGACCAAGAAACAGGCAACATAACATTGATGGAGAAATGTGATGTTACAGACCTTGGTTTACA
C
AGAGTGTTGGTCAAAGCTAATGACTTAGGACAGCCTGATTCTCTCTTCAGTGTTGTAATTGTCAATCTG
TTC
GTGAATGAGTCGGTGACCAATGCTACACTGATTAATGAACTGGTGCGCAAAAGCACTGAAGCACCAG
TG
ACCCCAAATACTGAGATAGCTGATGTATCCTCACCAACTAGTGACTATGTCAAGATCCTGGTTGCAGC
T
GTTGCTGGCACCATAACTGTCGTTGTAGTTATTTTCATCACTGCTGTAGTAAGATGTCGCCAGGCACCA
CAC
CTTAAGGCTGCTCAGAAAAACAAGCAGAATTCTGAATGGGCTACCCCAAACCCAGAAAACAGGCAGA
TG
ATAATGATGAAGAAAAAGAAAAAGAAGAAGAAGCATTCCCCTAAGAACTTGCTGCTTAATTTTGTCAC
T
ATTGAAGAAACTAAGGCAGATGATGTTGACAGTGATGGAAACAGAGTCACACTAGACCTTCCTATTGAT
CTA
GAAGAGCAAACAATGGGAAAGTACAATTGGGTAACTACACCTACTACTTTCAAGCCCGACAGCCCTG
AT
TTGGCCCGACACTACAAATCTGCCTCTCCACAGCCTGCCTTCCAAATTCAGCCTGAAACTCCCCTGAA
T
TCGAAGCACCACATCATCCAAGAACTGCCTCTCGATAACACCTTTGTGGCCTGTGACTCTATCTCCAAG
TGT
TCCTCAAGCAGTTCAGATCCCTACAGCGTTTCTGACTGTGGCTATCCAGTGACGACCTTCGAGGTAC
CT
GTGTCCGTACACACCAGACCGCCAATGAAGGAGGTTGTGCGATCTTGCACCCCCATGAAAGAGTCTAC
A
ACTATGGAGATCTGGATTCATCCCCAACCACAGTCCCAGCGGCGTGTCACATTTCACCTGCCAGAAGGC
TCT
CAGGAAAGCAGCAGTGATGGTGGACTGGGAGACCATGATGCAGGCAGCCTTACCAGCACATCTCATG
GC
CTGCCCCTTGGCTATCCTCAGGAGGAGTACTTTGATCGTGCTACACCCAGCAATCGCACTGAAGGGGA
T
GGCAACTCCGATCCTGAATCTACTTTCATACCTGGACTAAAGAAAGCTGCAGAAATAACTGTTCAACCA
ACT
GTGGAAGAGGCCTCTGACAACTGCACTCAAGAATGTCTCATCTATGGCCATTCTGATGCCTGCTGGA
TG
CCGGCATCTCTGGATCATTCCAGCTCTTCGCAAGCACAGGCCTCTGCTCTATGCCACAGCCCACCACT
G
TCACAGGCCTCTACTCAGCACCACAGCCCACGAGTGACACAGACCATTGCTCTCTGCCACAGCCCTCCA
GTG
ACACAGACCATCGCATTGTGCCACAGCCCACCACCGATACAGGTGTCTGCTCTCCACCACAGTCCTC
CT
CTAGTGCAGGCTACTGCACTTCACCACAGCCCACCATCAGCACAGGCCTCAGCCCTCTGCTACAGCCC
T
CCTTTAGCACAGGCTGCTGCAATCAGCCACAGCTCTCCTCTGCCACAGGTTATTGCCCTCCATCGTAGT
CAG
GCCCAATCATCAGTCAGTTTGCAGCAAGGTTGGGTGCAAGGTGCTGATGGGCTATGCTCTGTTGATC
AG
GGAGTGCAAGGTAGTGCAACATCTCAGTTTTACACCATGTCTGAAAGACTTCATCCCAGTGATGATTC
A
ATTAAAGTCATTCCTTTGACAACCTTCACTCCACGCCAACAGGCCAGACCGTCCAGAGGTGATTCCCCC
ATT
ATGGAAGAACATCCCTTGTAA


Translation (1337 aa):
MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYKTG
D
VPLIRIEEDTGEIFTTGARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFP
A
TVINISIPENSAINSKYTLPAAVDPDVGINGVQNYELIK
SQNIFGLDVIETPEGDKMPQLIVQKELDRE
E
KDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGE
N
AKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAMVLVNVTDVND
N
VPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTCFTDHEIPFRLRPVFSNQFLLET
A
AYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSA
M
DADSGPNAKINYLLGPDAPPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSI
I
DQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNIS
F
DREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSYELVLPSTNPGTVVFQVIA
V
DNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVKANDLGQPDSLFSVVIVNL
F
VNESVTNATLINELVRKSTEAPVTPNTEIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAP
H
LKAAQKNKQNSEWATPNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPID
L
EEQTMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVACDSISK
C
SSSSSDPYSVSDCGYPVTTFEVPVSVHTRP
PMKEVVRSCTPMKESTTMEIWIHPQPQSQRRVTFHLPEG
S
QESSSDGGLGDHDAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPES
TFIPGLKKAAEITVQP
T
VEEASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTIALCHSPP
V
TQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPLPQVIALHRS
Q
AQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFTPRQQARPSRGDSP
I
MEEHPL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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