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Report for CCDS15138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15138.1 Public Mus musculus 1 Ugt1a9 23 108 98 CCDS HistoryNCBI Gene:394434Re-query CCDS DB by CCDS ID:15138.1Re-query CCDS DB by GeneID:394434See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15138.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073772.4 ENSMUSP00000073444.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073772.4Link to Ensembl Protein Viewer:ENSMUSP00000073444.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000073772Re-query CCDS DB by Protein ID:ENSMUSP00000073444
Original member Current member NCBI NM_201644.2 NP_964006.2 Accepted alive Link to Nucleotide Sequence:NM_201644.2Link to Protein Sequence:NP_964006.2Re-query CCDS DB by Nucleotide ID:NM_201644Re-query CCDS DB by Protein ID:NP_964006Link to BLAST:NP_964006.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_964006.2 528 Q62452-1 528 100% 0 0

Chromosomal Locations for CCDS 15138.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 88070830 88071678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88215044 88215175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88215795 88215882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88216138 88216357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88218127 88218424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGCTCCTGTAGCCTTTCCCACCTCCTTTTTTCTCTGTCTGCTTCTGGCCTCTGGCTTGGCCCAGGCAG
GC
AGGCTGCTGGTGGTGCCCATGGATGGAAGCCACTGGTTCACCATGCAGATGGTTGTGGAGAAACTCAT
T
CACAGAGGGCATGAGGTTGTGGTAGTCATCCCAGAGGTGAGTTGGCAGCTGGGGAAATCACTGAATTGT
ACA
GTGAAGACTTACTCAATTTCTCACACTCTGGAAGACCTGGACAGAGAGTTCAAGTATTTATCTTACA
CT
CAATGGAAAACTCCAGAACACAGTATACGTTCTTTCTTGACTGGTTCAGCCAGAGGTTTCTTTGAACT
A
ACATTTTCACACTGCAGGAGTTTGTTTAACGACAAGAAGTTAGTGGAGTACTTGAAGCAGAGATTTTTT
GAT
GCAGTGTTTCTGGATCCTTTCGATGTGTGTGGATTAATTGTCGCCAAATATTTCTCGCTCCCATCAG
TG
ATCTTTGCAAGAGGTGTATTTTGTGACTATCTTGAAGAGGGTGCCCAGTGCCCAAGTCTTCCTTCCTA
T
GTTCCTAGACTTTTCTCAAAATACACAGACACCATGACTTTCAAGGAGAGAGTGTGGAACCATCTTATC
TAC
ATTGAAGAACATGCATTTTGCTCCTACTTTTTAAGAACTGCTGTTGAAGTTGCATCTGAAATTCTTC
AG
ACCCCAGTGACTATGACAGACCTCTTTAGCCCAGTGTCTATTTGGTTGTTACGCACTGACTTTGTGTT
G
GAGTTCCCCAGGCCTGTGATGCCTAACATGGTCTTTATTGGTGGGATCAACTGCCTCCAGAAGAAGTCA
CTT
TCCAAGGAATTTGAAGCCTATGTCAACGCCTCTGGGGAGCATGGCATCGTTGTTTTCTCTTTGGGAT
CC
ATGGTCTCAGAGATTCCGGAGAAGAAAGCCATGGAAATTGCTGAGGCTTTGGGCAGAATTCCTCAGAC
G
GTCCTGTGGCGCTACACCGGAACTAGACCATCGAATCTTGCAAAGAACACAATTCTTGTCAAATGGCTA
CCC
CAAAATGATCTGCTTGGTCATCCAAAGACTCGGGCATTCATCACACACTCTGGCTCCCATGGTATTT
AT
GAAGGAATATGCAATGGAGTTCCGATGGTGATGATGCCCCTATTTGGCGATCAGATGGACAATGCCAA
G
CGCATGGAAACTCGGGGAGCTGGGGTGACCCTGAATGTCCTTGAAATGACTGCTGATGATTTGGAAAAT
GCC
CTTAAAACTGTCATCAACAACAAGAGCTACAAGGAGAACATCATGCGCCTCTCCAGCCTTCACAAGG
AC
CGTCCTATAGAGCCTCTGGACCTGGCTGTGTTCTGGGTGGAATACGTGATGAGGCACAAGGGGGCACC
A
CACCTGCGCCCGGCCGCCCATGACCTCACCTGGTATCAGTACCACTCCTTGGATGTGATTGGCTTCCTC
CTG
GCCATTGTGTTGACAGTGGTCTTCATTGTCTTTAAATGTTGTGCCTATGGCTGCCGGAAATGCTTTG
GG
GGAAAGGGGCGAGTGAAGAAATCACACAAATCCAAGACCCATTGA


Translation (528 aa):
MAPVAFPTSFFLCLLLASGLAQAGRLLVVPMDGSHWFTMQMVVEKLIHRGHEVVVVIPEVSWQLGKSLNC
T
VKTYSISHTLEDLDREFKYLSYTQWKTPEHSIRSFLTGSARGFFELTFSHCRSLFNDKKLVEYLKQRFF
D
AVFLDPFDVCGLIVAKYFSLPSVIFARGVFCDYLEEGAQCPSLPSYVPRLFSKYTDTMTFKERVWNHLI
Y
IEEHAFCSYFLRTAVEVASEILQTPVTMTDLFSPVSIWLLRTDFVLEFPRPVMPNMVFIGGINCLQKKS
L
SK
EFEAYVNASGEHGIVVFSLGSMVSEIPEKKAMEIAEALGRIPQTVLWRYTGTRPSNLAKNTILVKWL
P
QNDLL
GHPKTRAFITHSGSHGIYEGICNGVPMVMMPLFGDQMDNAKRMETRGAGVTLNVLEMTADDLEN
A
LKTVINNK
SYKENIMRLSSLHKDRPIEPLDLAVFWVEYVMRHKGAPHLRPAAHDLTWYQYHSLDVIGFL
L
AIVLTVVFIVFKCCAYGCRKCFGGKGRVKKSHKSKTH




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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