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Report for CCDS15736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15736.1 Public Mus musculus 2 Il1rn 23 108 98 CCDS HistoryNCBI Gene:16181Re-query CCDS DB by CCDS ID:15736.1Re-query CCDS DB by GeneID:16181See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114487.8 ENSMUSP00000110131.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114487.8Link to Ensembl Protein Viewer:ENSMUSP00000110131.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114487Re-query CCDS DB by Protein ID:ENSMUSP00000110131
Original member Current member NCBI NM_031167.5 NP_112444.1 Accepted alive Link to Nucleotide Sequence:NM_031167.5Link to Protein Sequence:NP_112444.1Re-query CCDS DB by Nucleotide ID:NM_031167Re-query CCDS DB by Protein ID:NP_112444Link to BLAST:NP_112444.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112444.1 159 P25085-2 159 100% 0 0

Chromosomal Locations for CCDS 15736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 24336983 24336992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24345520 24345571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24347466 24347554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24348516 24348628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24349415 24349630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGGCTTCAGAGGCAGCCTGCCGCCCTTCTGGGAAAAGACCCTGCAAGATGCAAGCCTTCAGAATCTGGG
ATACTAACCAGAAGACCTTTTACCTGAGAAACAACCAGCTCATTGCTGGGTACTTACAAGGACCAAATAT
CAAACTAGAAGAAAAGATAGACATGGTGCCTATTGACCTTCATAGTGTGTTCTTGGGCATCCACGGGGGC
AAGCTGTGCCTGTCTTGTGCCAAGTCTGGAGATGATATCAAGCTCCAGCTGGAGGAAGTTAACATCACTG
ATCTGAGCAAGAACAAAGAAGAAGACAAGCGCTTTACCTTCATCCGCTCTGAGAAAGGCCCCACCACCAG
CTTTGAGTCAGCTGCCTGTCCAGGATGGTTCCTCTGCACAACACTAGAGGCTGACCGTCCTGTGAGCCTC
ACCAACACACCGGAAGAGCCCCTTATAGTCACGAAGTTCTACTTCCAGGAAGACCAATAG

Translation (159 aa):
MASEAACRPSGKRPCKMQAFRIWDTNQKTFYLRNNQLIAGYLQGPNIKLEEKIDMVPIDLHSVFLGIHGG
KLCLSCAKSGDDIKLQLEEVNITDLSKNKEEDKRFTFIRSEKGPTTSFESAACPGWFLCTTLEADRPVSL
TNTPEEPLIVTKFYFQEDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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