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Report for CCDS15914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15914.1 Public Mus musculus 2 Ptges2 23 108 98 CCDS HistoryNCBI Gene:96979Re-query CCDS DB by CCDS ID:15914.1Re-query CCDS DB by GeneID:96979See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15914.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028162.4 ENSMUSP00000028162.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028162.4Link to Ensembl Protein Viewer:ENSMUSP00000028162.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028162Re-query CCDS DB by Protein ID:ENSMUSP00000028162
Original member Current member NCBI NM_133783.2 NP_598544.2 Accepted alive Link to Nucleotide Sequence:NM_133783.2Link to Protein Sequence:NP_598544.2Re-query CCDS DB by Nucleotide ID:NM_133783Re-query CCDS DB by Protein ID:NP_598544Link to BLAST:NP_598544.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598544.2 384 Q8BWM0 384 100% 0 0

Chromosomal Locations for CCDS 15914.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32396275 32396550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32397538 32397735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32400050 32400108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32400403 32400552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32400878 32401078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32401487 32401604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32402176 32402328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGGCCCAGGCGGCGCGCCTTTCGTGGGTGCTTGTCTCTAGCCGGTGCGCCCTGACTGAGGGGCTGCTCA
CA
CGACCCTGGCAGCCGCTCTCGGCACAGAGCCGGGCTGGCTTCACCAGGGTGGCTGCCGGAAGCCGGGG
C
GCCGCGGTCCGCAAGGGGAGCCCGCGGTTGCTGGGGGCGGCGGCGCTGGCCCTGGGCGGCGCGCTGGGG
CTG
TACCACACCGTGCGGTGGCACCAGCGTTCCCAGGACCTCCGCGCGGAGCGCTCGGCTGCGCAGCTGC
CC
CTGTCGAACAGCCTGCAGCTGACCCTGTACCAGTACAAGACATGTCCCTTCTGCAGCAAAGTCCGTGC
C
TTCCTCGACTTCCACTCCCTGCCCTATCAGGTGGTGGAGGTGAATCCCGTGAGAAGGACTGAGATCAAA
TTC
TCCTCCTACAGGAAAGTGCCCATCTTGGTGGCCCAGGAAGGAGACAGCTTGCAACAGCTCAATGACT
CC
TCTGTCATCATTAGTGCCCTCAAGACCTACCTGGTTTCAGGGCAGCCCCTGGAAGAGGTCATCACTTA
T
TACCCACCCATGAAGGCCATGAATGACCAGGGCAAGGAGGTGACCGAGTTTTGCAACAAGTACTGGCTC
ATG
CTGGACGAGAAGGAGGCCCAGCAGATGTATGGCGGGAAGGAAGCCAGGACGGAGGAGATGAAGTGGC
GG
CAGTGGGCGGATGACTGGCTGGTGCATCTCATCTCTCCCAACGTGTACCGAACACCCGCTGAGGCCTT
G
GCTTCCTTCGACTACATTGTCCGTGAGGGCAAGTTTGGGGCTGTGGAGGCTGCCATGGCCAAGTATGTG
GGC
GCGGCTGCCATGTACCTCATCAGCAAGCGCCTCAAAAGCAGGCACCACCTGCAGGATGATGTACGGG
TA
GACCTCTATGAAGCAGCCAACAAGTGGGTGACAGCCGTGGGTAAAGACCGGCCATTCATGGGGGGTCA
G
AAGCCTAACCTTGCTGACCTGGCAGTGTATGGTGTGCTGCGAGTGATGGAGGGTCTGGAGGCCTTCGAC
GAC
CTGATGCGACACTCACACATCCAGCCTTGGTACCTGCGGATGGAGCGGGCCATTGAAGAAGCCCCCT
CG
GTGCATCATGTCAACCCTAGCTGCAAAGACTAG


Translation (384 aa):
MAQAARLSWVLVSSRCALTEGLLTRPWQPLSAQSRAGFTRVAAGSRGAAVRKGSPRLLGAAALALGGALG
L
YHTVRWHQRSQDLRAERSAAQ
LPLSNSLQLTLYQYKTCPFCSKVRAFLDFHSLPYQVVEVNPVRRTEIK
F
SSYRKVPILVAQEGDSL
QQLNDSSVIISALKTYLVSGQPLEEVITYYPPMKAMNDQGKEVTEFCNKYWL
M
LDEKEAQQMYGGKEAR
TEEMKWRQWADDWLVHLISPNVYRTPAEALASFDYIVREGKFGAVEAAMAKYV
G
AAAMYLISKRLKS
RHHLQDDVRVDLYEAANKWVTAVGKDRPFMGGQKPNLADLAVYGVLRVMEGLEAFD
D
LMRHSHIQPWYLRMERAIEEAPSVHHVNPSCKD




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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