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Report for CCDS15920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15920.1 Public Mus musculus 2 Pip5kl1 23 108 98 CCDS HistoryNCBI Gene:227733Re-query CCDS DB by CCDS ID:15920.1Re-query CCDS DB by GeneID:227733See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15920.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055304.13 ENSMUSP00000051282.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055304.13Link to Ensembl Protein Viewer:ENSMUSP00000051282.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055304Re-query CCDS DB by Protein ID:ENSMUSP00000051282
Original member Current member NCBI NM_198191.3 NP_937834.1 Accepted alive Link to Nucleotide Sequence:NM_198191.3Link to Protein Sequence:NP_937834.1Re-query CCDS DB by Nucleotide ID:NM_198191Re-query CCDS DB by Protein ID:NP_937834Link to BLAST:NP_937834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937834.1 395 Q6U7H8-1 395 100% 0 0

Chromosomal Locations for CCDS 15920.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32575865 32575894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32576651 32576851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32577872 32577925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32578109 32578263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32578480 32578604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32578936 32578970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32579058 32579113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32579941 32580053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32580279 32580429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32583273 32583540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGCCACACCAAGCCTTAGGTCCCACGAGATCCCGGCCCACTCCCAGGAGGCTGGAAACAAGTCCATTT
CCTCAGGGAGCCGCCGCGGCCTTCTTTGGCACCTCCGAGCCAGGCAGTCTAGAGTTGGCCTGTTTGAGGT
CGGTCCAGGACATGAGCTGCATAGAATGACACGAATGATGCAGGAAGGGCTGTGGGCTGCCACCCAGGTC
TCCAAGAACAACCCACCCACGGGACCTACTACCCAGAAGGATTACCTGGAAGTCATGACCCAAGTTCACG
AAGAGGGCTTCGAGCTGGGCACCTTGGCTGGCCCGGCTTTTGCACGGCTGAGGAAATCCATTGGCCTGAC
TGAAGAGGACTACCAGGCTACTCTTGGCCCTGGTGATCCCTACCTTCAATTCTTCAGCACCTCCAAAAGC
AAGGCCAGCTTCTTCCTGACCCACGACCAGCGCTTCTTTGTGAAGACCCAACGGCGCCACGAAGTGCATG
TGCTGCTTGCCCACCTGCCCCGCTATGTGGAGCACCTGCAGCAATACCCACACTCCCTGCTGGCACGGTT
GCTGGGCGTATACAGTCTGCGGGTAGCTCAGGGGAAAAAGAAGTACTTCATCATCATGCAGTGCATCTTC
TACCCTACCAGCCGCATTTCTGAGAGGTATGACATCAAGGGCTGCAACATAAGCCGCTGGGTAGATCCAG
CCCCTGAGGGCAGCCCCCTTGTCTTGGTGCTGAAGGACCTCAACTTTCAAGAAAAGACCATGAGATTGGG
AGCCCAGCGGAGCTGGTTCCTCCGGCAGATGGAGCTAGACACCGCCTTCCTGCGGGAGGTGAATGTACTG
GATTACAGCCTCCTGGTGGCCATCCAGTTTCTCCACGAAGACGAGAAGGGCATTCACCACTCTGTCTTCA
GCACATTCAAGTCCATACAAGGTGTGTCGAAGTCGAAGGGAACGGGGGACCAGAACTGCCGGATGCTGCC
CGACCTTCCCAATGCCCTCCATATCTTGGACGGGCCAGACCAACGCTATTTTCTGGGCTTAGTGGATATG
ACTACCGTGTATGGGTTTCGCAAACGGCTGGAACATGTGTGGAAGATGGTACGCTATCCAGGCCAGAGCG
TCTCCACTGTCAGCCCGGCTCACTACGCCCGTCGCCTCTGTCGGTGGGCAGAGGTGCACACAGAATGA

Translation (395 aa):
MATPSLRSHEIPAHSQEAGNKSISSGSRRGLLWHLRARQSRVGLFEVGPGHELHRMTRMMQEGLWAATQV
SKNNPPTGPTTQKDYLEVMTQVHEEGFELGTLAGPAFARLRKSIGLTEEDYQATLGPGDPYLQFFSTSKS
KASFFLTHDQRFFVKTQRRHEVHVLLAHLPRYVEHLQQYPHSLLARLLGVYSLRVAQGKKKYFIIMQCIF
YPTSRISERYDIKGCNISRWVDPAPEGSPLVLVLKDLNFQEKTMRLGAQRSWFLRQMELDTAFLREVNVL
DYSLLVAIQFLHEDEKGIHHSVFSTFKSIQGVSKSKGTGDQNCRMLPDLPNALHILDGPDQRYFLGLVDM
TTVYGFRKRLEHVWKMVRYPGQSVSTVSPAHYARRLCRWAEVHTE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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