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Report for CCDS16072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16072.1 Public Mus musculus 2 Cobll1 23 108 98 CCDS HistoryNCBI Gene:319876Re-query CCDS DB by CCDS ID:16072.1Re-query CCDS DB by GeneID:319876See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16072.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102726.7 ENSMUSP00000099787.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102726.7Link to Ensembl Protein Viewer:ENSMUSP00000099787.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102726Re-query CCDS DB by Protein ID:ENSMUSP00000099787
Original member Current member NCBI NM_177025.6 NP_795999.2 Accepted alive Link to Nucleotide Sequence:NM_177025.6Link to Protein Sequence:NP_795999.2Re-query CCDS DB by Nucleotide ID:NM_177025Re-query CCDS DB by Protein ID:NP_795999Link to BLAST:NP_795999.2

Chromosomal Locations for CCDS 16072.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 65089471 65089557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65095688 65095864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65097633 65099389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65102069 65102166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65103160 65103394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65105715 65105828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65107012 65107086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65107758 65107917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65125893 65126117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65126208 65126305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65133579 65133807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65136345 65136546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65150979 65151167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65238363 65238439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3723 nt):
ATGGACCGCAGCGTCCCGGATCCCCTACCCCGCAGCGCGCCCCGCACCCCCGCCATGCAGCCCGCGGGCT
CCGCAGGCAGGAAAACAAAAGGGAAGGCGCCTCTTCCTCCGGCCGAGACGAAGGGCACTGATGTCTCTTC
TGCTGAAGACCCTGTAGAATCTACTGCTGTCGTCACAGAGCAACAAGACAATATGATAGATAAAGATATT
GAGCTCTCAGTGGTCCTGCCGGGAGATATCCTCAAGTCTACTACTGTTCATGGCAGTAAGCCAATGATGG
ACTTGCTCGTGTTCCTCTGTGCTCAGTATCACTTAAATCCGTCAAGTCACACAATTGATTTGCTCTCTGC
TGAAGAGAACCTTATCAAATTTAAGCCAAACACACCAATAGGAATGCTGGATGTAGAGAAGGTAATTTTA
AAGCCAAAATCTCTGGATAAGAAAAAGCCTACACCTATAATCCCAGAGAAAACTGTGAGAGTAGTGATCA
ACTTTAAGAAAACACAGAAGACCATAGTGAGAGTTAGTCCCCACGCACCCCTTCAAGATCTTGCTCCCAT
CATATGCAGTAAATGTGAGTTTGATCCGTTGCATACCGTGCTGTTGAAGGATTACCAGGCTCAGGAGCCC
CTCGACTTGACAAAATCTCTTAATGACTTGGGACTAAGAGAGTTATATGCCATGGATATCAGCAGAGAGT
CCTGCCAAATATCACACAACCCGGACATTGTGAAGGAGAAAGAAAACAAAGGGATTTTCAGTTTTTTCCA
ACGCAGCAAGAAAAAGCGAGAGCAAACTGCCAGTGCTCCTGCGACCCCACTAGTGAGCAAGCATCGTCCA
TCTTTCACGAGGTCCAACACCATTTCCAAACCGTACATTTCCAATACCCTGCCCTCGGATGCACCCAAGA
AGAGACGTGCCCCACTGCCACCGATGCCCACATCCCAGGGTGCTGCTCAAGGCCAGGAGAGACGAGCGTC
TTGTGTGGAGAGATCCACCAGTGTGGACGACACAGATAAGAGTTCCTCTGAAGCGATCATGGTGAGGACA
GGATCACTGCAGCTCAGCAGCACGTCGATAGGAACTTCATCTCTGAAGAGAACGAAGCGAAAAGCACCTG
CCCCACCTTCGAAAACCCCCCTGGCTCAGACTGATGAAAGGAACTCTGCAATGGCTCATGGCCTACCTTT
GGAAGATGGGATTGCTCCAGACAGCATGTTGGAACTGAGCTCTCCCGAGGGAATGTCCACCCCAGAGGGC
TCCCTTGGTCCCGGGTTCCTAAGCCAGGAGCAGTGTGCTGTGCCCAAGCCGCCGGATGAAATCTCTGAGG
GCCCTGGAACTCCAGAGGCAGCTGTAGCATCCTTGACCTCTGGTGTAAGCTCTGATTACAGTCTTGAGGA
GATAGATGAAAAGGAAGAACTCAGCGAGGCATCTAAAGATCCGGCTGGAAGTATTTCTGTGAAGTCGCCT
GACATTGCTTCAGCATCGACTGATATGAGAATTACAGTGGAGAAGGATCCTGATTCAGCCCTCGGCATCA
GTGATGGAGAGACCTCTCCAAGCTCCAAGGGAAAAACTCAAGAAGGCAGAAGCACAGAGGGGCAAGGGCC
GTATCATCCTGTTGTAGGCCATATAGGCAATGAGGACAGAGTATCTGACAGTATAAAAGACATGAAGACA
CTGGGCCCAAACCAGGAGAGTGTTCAAAATGAAATCATGGTCTGTGCCACAAGCACAGATTATGTGAAAA
ACAGACCGGGGAAAATGGAAACCACCATAGAAGGCGAAGGCGAAGCTCTGAAGAAAGCCAGCGACATGGA
AACTGATAGATTGTCAGGCTCTCCTGCATGTAGAATGGACAATGTTAAAAGTTCGAGGGAAAATCATCTA
ACAGCATCGCCAGGACCAGATCAAAAATTGAATCAACCAGGTGTAGAGAAGACGAAAATGCAGGATGCAG
CAATTCAGGCCACCCCTGCCCGCGGCACTTTTGATGGGAATCACGAAGTCAGTAATTCATCTGACCCCAG
GGCTGATGAGACTGTGCAGACTTCGGATGGCAGCATATCAGCTCAGCACTCCTCTGCAAGTCTCCAGGAT
TCTGTAAATGCCTCAAGAGAATTCAGGAGTCAGGGCACCTCAACTTATGTACAAGATAGACTCCCTGAGA
AAGAGCCAGCTTGTACATATGGGAACAATGTCCCTTTGTCACCTGTAGATGGAAGTAATAAGAATCCAGC
TGCTTCTTACCTAAAGAACTTTCCACTTTATAGGCAAGACTCCAACCCCAAGCCAAAACCGTCAAATGAA
ATCACGAGAGAGTATATACCTAAAATTGGAATGACTACTTATAAAATAGTACCTCCGAAATCCCTGGAAA
TGGCGAAAGACTGGGAATCAGAAGCAATGGGGAGGAAAGATGACCAAAAGATGCTCCCTGTAGGGCAGAG
GCATACGATTGAGAATATGACAGAAACTTCCATGCAAACAGAAGTCCCTGCTACTTCTAAAAGCTCACAG
CAGCCTCAGCCTGACCTTAAACCAAAGCCCAGCTCAGGAACAGAGCGTCATTTGCACAGGACTTTGAGCT
CACCAACTGGTACCGAGACGAACCCTCCCAAAGCACCCAGAGTGACTACAGACACTGGCACCATTCCTTT
TGCGCCAAATTTGGAAGATATAAACAATATTTTGGAGTCAAAATTTAGATCCCGAGCTTCAAATCCCCAG
GCCAAACCAAGTTCATTCTTTTTGCAGATGCAAAAGAGAGCATCAGGCCACTATGTGACATCTGCAGCTG
CTAAGAGCGTCCACACTGCCCCTGGGCCTGCCCCTAAAGAGCCAACAATCAAGGAGGTGCAGAGGGACCC
ACAGCTTTCTCCAGAACAGCATCCTTCTTCCTTAAGTGAAAGGACTCACTCTGCTCCGCTGCCCAATATT
TCAAAAGCTGATGATGATATAATTCAGAAGCCTGCCGAGACCTCTCCTCCTCCTGTAGCTCCCAAACCAA
TGACTCTTCGTGCCGAGACCTCTCCTCCTCCTGTATTTCCCAAACCAATGACTCTTCCTGCTGAGACCTC
TCCTCCTCCTGTATTTCCCAAACCAATGACTCTTCCTGCCGAGACCTCTCTTCCTCTTGTATTTCCCAAA
CCAATGACTCTTCGAGCCGAGACCTCTCCTCCTCCTGTAGCTGCCAAGCCTGTGGCTCTCCCTGGTAGTC
AGGGAACATCACTAAACCTGAAGACCTTGAAAACATTTGGGGCCCCAAGACCATACTCCAGTTCTGGCCC
CTCACCCTTTGCCCTTGCTGTGGTGAAAAGGTCACAGTCGTTCAGTAAGGCATGCCCAGAGTCAGCCAGT
GAGGGCTCCTCTGCCCTGCCTCCAGCTGCCACACAGGATGAAAAGACACATACAGTAAACAAGCCTACGG
TGGGCTCCCAACATGGTGATGGTGATAAGCAAAATAATCCTGTACAGAATGAGCACAGTTCTCAAGTGCT
GACTCCAGCTGATGGCCCATCGTTCACCCTTAAGAGACAGAGTTCTCTAACATTCCAGAGCTCTGACCCA
GAGCACGTACGACAGAGCTTGCTCACTGCAATCCGGTCTGGAGAGGCTGCTGCCAAGTTGAAGAGAGTTA
CTGTTCCATCGAATACAATATCTGTGAATGGGAAGTCGGGCCTCAGCCAGTCCATGTCCATTGACGCCCA
GGACAGTCGCTAA

Translation (1240 aa):
MDRSVPDPLPRSAPRTPAMQPAGSAGRKTKGKAPLPPAETKGTDVSSAEDPVESTAVVTEQQDNMIDKDI
ELSVVLPGDILKSTTVHGSKPMMDLLVFLCAQYHLNPSSHTIDLLSAEENLIKFKPNTPIGMLDVEKVIL
KPKSLDKKKPTPIIPEKTVRVVINFKKTQKTIVRVSPHAPLQDLAPIICSKCEFDPLHTVLLKDYQAQEP
LDLTKSLNDLGLRELYAMDISRESCQISHNPDIVKEKENKGIFSFFQRSKKKREQTASAPATPLVSKHRP
SFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGAAQGQERRASCVERSTSVDDTDKSSSEAIMVRT
GSLQLSSTSIGTSSLKRTKRKAPAPPSKTPLAQTDERNSAMAHGLPLEDGIAPDSMLELSSPEGMSTPEG
SLGPGFLSQEQCAVPKPPDEISEGPGTPEAAVASLTSGVSSDYSLEEIDEKEELSEASKDPAGSISVKSP
DIASASTDMRITVEKDPDSALGISDGETSPSSKGKTQEGRSTEGQGPYHPVVGHIGNEDRVSDSIKDMKT
LGPNQESVQNEIMVCATSTDYVKNRPGKMETTIEGEGEALKKASDMETDRLSGSPACRMDNVKSSRENHL
TASPGPDQKLNQPGVEKTKMQDAAIQATPARGTFDGNHEVSNSSDPRADETVQTSDGSISAQHSSASLQD
SVNASREFRSQGTSTYVQDRLPEKEPACTYGNNVPLSPVDGSNKNPAASYLKNFPLYRQDSNPKPKPSNE
ITREYIPKIGMTTYKIVPPKSLEMAKDWESEAMGRKDDQKMLPVGQRHTIENMTETSMQTEVPATSKSSQ
QPQPDLKPKPSSGTERHLHRTLSSPTGTETNPPKAPRVTTDTGTIPFAPNLEDINNILESKFRSRASNPQ
AKPSSFFLQMQKRASGHYVTSAAAKSVHTAPGPAPKEPTIKEVQRDPQLSPEQHPSSLSERTHSAPLPNI
SKADDDIIQKPAETSPPPVAPKPMTLRAETSPPPVFPKPMTLPAETSPPPVFPKPMTLPAETSLPLVFPK
PMTLRAETSPPPVAAKPVALPGSQGTSLNLKTLKTFGAPRPYSSSGPSPFALAVVKRSQSFSKACPESAS
EGSSALPPAATQDEKTHTVNKPTVGSQHGDGDKQNNPVQNEHSSQVLTPADGPSFTLKRQSSLTFQSSDP
EHVRQSLLTAIRSGEAAAKLKRVTVPSNTISVNGKSGLSQSMSIDAQDSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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