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Report for CCDS16159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16159.1 Public Mus musculus 2 Prkra 23 108 98 CCDS HistoryNCBI Gene:23992Re-query CCDS DB by CCDS ID:16159.1Re-query CCDS DB by GeneID:23992See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16159.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002808.6 ENSMUSP00000002808.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002808.6Link to Ensembl Protein Viewer:ENSMUSP00000002808.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000002808Re-query CCDS DB by Protein ID:ENSMUSP00000002808
Original member NCBI NM_011871.3 NP_036001.1 Updated not alive Link to Nucleotide Sequence:NM_011871.3Link to Protein Sequence:NP_036001.1Re-query CCDS DB by Nucleotide ID:NM_011871Re-query CCDS DB by Protein ID:NP_036001
Current member NCBI NM_011871.4 NP_036001.1 Accepted alive Link to Nucleotide Sequence:NM_011871.4Link to Protein Sequence:NP_036001.1Re-query CCDS DB by Nucleotide ID:NM_011871Re-query CCDS DB by Protein ID:NP_036001Link to BLAST:NP_036001.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036001.1 313 Q9WTX2 313 100% 0 0

Chromosomal Locations for CCDS 16159.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 76630411 76630568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76633533 76633707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76636795 76636889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76639200 76639317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76640241 76640319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76643223 76643304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76647125 76647294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76647792 76647856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGTCCCATAGCAGGCATCGTGCCGAGGCCCCGCCGCTGCAGCGCGAGGACAGCGGGACCTTCAGTTTGG
GCAAGATGATAACAGCTAAGCCTGGGAAAACACCGATTCAGGTATTGCACGAGTACGGCATGAAGACCAA
GAACATTCCAGTTTATGAATGTGAAAGATCCGATGTGCAAGTACACGTGCCCACTTTCACCTTCAGAGTA
ACCGTTGGTGACATAACTTGCACAGGTGAAGGTACAAGTAAGAAGCTGGCGAAGCACAGAGCTGCGGAGG
CCGCCATAAACATTTTGAAAGCCAATGCAAGTATTTGCTTTGCAGTTCCTGACCCCTTAATGCCTGATCC
ATCCAAACAGCCGAAGAACCAGCTGAATCCAATTGGCTCATTACAGGAATTAGCAATTCACCATGGCTGG
CGACTTCCTGAATATACCCTTTCCCAGGAAGGAGGACCGGCTCATAAGAGGGAATACACCACGATCTGCA
GGCTTGAATCATTCATGGAAACTGGAAAGGGGGCATCAAAAAAACAAGCCAAGAGAAATGCTGCTGAGAA
ATTTCTCGCCAAGTTTAGTAATATTTCTCCAGAGAACCACATTTCTCTAACGAACGTGGTTGGACATTCC
CTAGGATGCACTTGGCACTCCTTGAGGAATTCCCCTGGTGAGAAGATCAACCTCCTGAAAAGGAGCCTCC
TCAGTCTCCCGAACACAGACTACATCCAGCTGCTTAGTGAGATTGCCAGCGAGCAAGGCTTTAACATAAC
GTATTTGGATATAGAGGAGCTGAGTGCCAACGGACAGTATCAGTGTCTCGCAGAGCTGTCCACCAGTCCT
ATCACCGTGTGTCACGGCTCAGGCATCTCCTGTGGCAATGCACAGAGTGACGCTGCTCACAATGCTCTGC
AGTATTTAAAGATAATAGCAGAAAGAAAGTAG

Translation (313 aa):
MSHSRHRAEAPPLQREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQVHVPTFTFRV
TVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGW
RLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTNVVGHS
LGCTWHSLRNSPGEKINLLKRSLLSLPNTDYIQLLSEIASEQGFNITYLDIEELSANGQYQCLAELSTSP
ITVCHGSGISCGNAQSDAAHNALQYLKIIAERK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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