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Report for CCDS16562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16562.1 Public Mus musculus 2 Arhgap11a 23 108 98 CCDS HistoryNCBI Gene:228482Re-query CCDS DB by CCDS ID:16562.1Re-query CCDS DB by GeneID:228482See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16562.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102545.7 ENSMUSP00000099604.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102545.7Link to Ensembl Protein Viewer:ENSMUSP00000099604.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102545Re-query CCDS DB by Protein ID:ENSMUSP00000099604
Original member Current member EBI ENSMUST00000110949.8 ENSMUSP00000106574.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110949.8Link to Ensembl Protein Viewer:ENSMUSP00000106574.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110949Re-query CCDS DB by Protein ID:ENSMUSP00000106574
Original member Current member NCBI NM_181416.3 NP_852081.2 Accepted alive Link to Nucleotide Sequence:NM_181416.3Link to Protein Sequence:NP_852081.2Re-query CCDS DB by Nucleotide ID:NM_181416Re-query CCDS DB by Protein ID:NP_852081Link to BLAST:NP_852081.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852081.2 987 Q80Y19 987 100% 0 0

Chromosomal Locations for CCDS 16562.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 113832973 113834462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113834778 113834916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113836866 113836971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113837426 113837552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113839675 113839842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113840699 113840773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113841597 113841740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113841907 113842070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113842686 113842939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113843247 113843343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113845255 113845325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113847961 113848089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2964 nt):
ATGTGGGATCAGAGACTGGTCAGATTGGCCCTGCTGCAGCAGCTTCGAGCTGTCTATGGCATTAAGGTCA
AGGGTGGCCGCGGTCAGTGCGATCGCAGGAGACATGAAACTGCAGCTACGGAAATAAAGGGTAAGGTATT
TGGAGTACCCTTTAATTCCTTGCCTCATTCAGTCGTTCCAGAATTTGGACACATTCCAAGCTTTCTTGTT
GATGCGTGCGCATCTTTAAAAGAGCATATTCATACAGAAGGGCTTTTTAGGAAGTCGGGGTCTGTTGTTC
GTCTAAAGGCACTAAAGAGTAAACTGGATCAAGGTGAAGCCTGCCTGTCTTCTGCACTTCCGTGTGATGT
TGCAGGCCTGCTTAAGCAGTTCTTCCGGGAATTGCCAGAGCCTGTCCTCCCAGCTGATCTGCATGAAGCA
CTTTTCAAAGCTCAGCAGTTAGGAGCAGAGGAGAGGAATAAAGCTACATTGTTGCTGTCGTGTCTTATGG
CAAACCCTACAGTTGATATATTAAGATACTTCTTTAACTTTCTTAAGAGTGTTTCTCTTAGGGCAAGTGA
GAATAAAATGGACAGCAGCAATCTTGCAGTAATATTTGCACCAAATCTTCTTCAGACAAGTGAAGGCCAT
GAGAAGATGTCTGCCAACACAGAGAAGAAGCTACGTCTGCAGGCAGCAGTAGTGCAGACTTTTATTGACT
GTGCATCAGACATTGGACGAGTGCCAGATTTTATCCTGGAAAAGATACCAGCCATGTTAGGTATTGATGG
ACTCTGTACTACTCCATCCCTGGAAGGCTTTGAAGGAGACTTTGAAACTCCTGGTGAATGTAAGAGAAAA
AGAAGACAAAGTGTTGGAGATTTTGTGAATGGAGCCCTAAATAAACTTAAATCTAGCAGAACACCCTCTA
TTACACCTCAACAAGATAGGACAGCTCAGGCCTCTGCATCACCATTGATTCTCACCCCGAGTGTTAAGCG
TAAACTGCCAGGAGAGTCTTCTCATGCTTTCTCGAGTAAGAAAAGGAAATCCATCAAGCACAACTTGAAC
TTTGAGCTGTTGCCAAGTCATTTCTTCAGCAGCAATTCTACACCAGTATCAGTTCACTTAGATACAAGTC
CTGACGGATCATCTCAGACTTCTCTCTCACCAATCGCCATGAGTGGAAACCACTTGGTCAGTACAGAATT
AAGGCGAAGTAAAAGGATTGCCAGCAAAAAAGTTTACAGGGTAGAGTCAGGAAAAGCGGGCTGCTTCTCT
CCCAAAGTCAGTCGTAAAGAAAAGACCCGAAGATCTCTCCGTCTGAAATTTAGTCTGGGGAAGAACAGAG
ATTCAGATGGATGTTCTGTCATCAATAGATATGAAAATGTTGGTCGACGACTAGCGAATCAGCAAAATCT
AAAAAGTAGGATTGATTCTGTAAAGACAGGCCTGCTTTTTAGCCCAGATATTGATGAAAGATTGCTAAAG
AAAGGCTCAGAAAAGATCAGCAAATCTGAGGAACACTTGTTAACTCCAGATCAACTAGATGGAACAGGTT
ACCGGATGTCTTGGACAGAACCCAGTAATTCAAGTTTTCAAGACATGAGTGCAAATGGAACTTCTCCAAT
AATGCAAAATCTTGAGGTGAAGAGCTTTTCTTTGGAGCCCGACATTACTGTTGAAAAATCACCAGTTGTG
TCCTGTGAGCTCAGGCCTTCCACCTTCCATAGCCAGCCTGACAGCAGTGTGCTGTCTCTTAGTGGGGATG
AAGGGAACCTGGCCTCCGAGACCTTGCAGAAGATTCAGAAAGCATTTTCCGAATCTGGGAGTGATCTTCA
TATGGTGATAAATCATGAGCAGTCATCAGTAACAAATACGGGGGAAGAAGTGGAATTCAGAGATGTGACT
GTGACTGAGTCAAAGGGACATGATGGGAGCTGTGCTGGGGAGGAGGAGAACTGTCCTTCAGAACGGAATT
TCTCACCGGATCAAAGCCCAGAGTTTGCCAGAGAAGCTGATGAGGAATGTTACTCAACTCAGATGAAGGT
GGAATGTGAAGGCCTGCACTCAGAAACACCCAAAGCTGACCCCCTCATCCTGCAAGCATTCCCCGGTGAG
GAGCCAGCTGAGGAACCACAGTCCCCAAGGAACCAGCTAAGCACTCCATCACGGGGGAATGAGAATGGGG
GGGAGAGCGCTGGGGCAAGTGGAGCTCCCGGAGAAGATGAGAGCACGTGCAGTGTGGCGGTCCTTTCGAA
ACCTCGGCCCCAGAGACTTTCGAGGCAACAGTCACTGGTGGAAAAATGTGATAGTGTAGCTCCTGGGGCT
CTACAAGTGACAGAGCACGGGAAGGTTTCTGATCACATACAGTGGTTTAATAAACTTTCTCTAAATGAAC
CGAACAGAGGAAAAGTGAAGTCACCTCTTAAATTTCAGCGTACTCCTGTCCGTCAGTCCGTCAGAAGAAT
TAATTCTTTGTTGGAGTATGGCAGGCAGCCTGTGAGGCAGAAGTTGGCAATCTTTGGTGACGCAGCTTCT
CCTCTCGTTAAATCAGTGAGCTGTGACAGTGCCCTTCCCTCTTGTGTACAAAACACATCAAAAGGTCCCA
CTGCTCCACTTATCACGTCAGGCCTCGAAGCACAGAAGTCTACGTCTTGTAATAAATCAAGTGTTGAGTT
AACTTCTAAATCTTTCACAAAAATGAAGAGACATCCGGATCCTTTGAGTGCTTCTCTTGGGACTCCCAGA
CTTTGTAAGCAGGAGAACAAATCTAATGGCCACATTAAGTTTCCTTTGGATGATCTCACGAATCATGAGA
GATTAAAATTTGTTGTAAATAACAATGTGGCCTTTTCTCCAGGGATGAAAAACAGAGTTGTTAGGAAACC
ATCAGAAAAAGAAAGGGTCTGGTACAAAGGGTCTCCTAAAAATCCTATTGGGAAGACTCAACTGCTACCA
ACGAGTAAGCCTGTCGACTTGTAA

Translation (987 aa):
MWDQRLVRLALLQQLRAVYGIKVKGGRGQCDRRRHETAATEIKGKVFGVPFNSLPHSVVPEFGHIPSFLV
DACASLKEHIHTEGLFRKSGSVVRLKALKSKLDQGEACLSSALPCDVAGLLKQFFRELPEPVLPADLHEA
LFKAQQLGAEERNKATLLLSCLMANPTVDILRYFFNFLKSVSLRASENKMDSSNLAVIFAPNLLQTSEGH
EKMSANTEKKLRLQAAVVQTFIDCASDIGRVPDFILEKIPAMLGIDGLCTTPSLEGFEGDFETPGECKRK
RRQSVGDFVNGALNKLKSSRTPSITPQQDRTAQASASPLILTPSVKRKLPGESSHAFSSKKRKSIKHNLN
FELLPSHFFSSNSTPVSVHLDTSPDGSSQTSLSPIAMSGNHLVSTELRRSKRIASKKVYRVESGKAGCFS
PKVSRKEKTRRSLRLKFSLGKNRDSDGCSVINRYENVGRRLANQQNLKSRIDSVKTGLLFSPDIDERLLK
KGSEKISKSEEHLLTPDQLDGTGYRMSWTEPSNSSFQDMSANGTSPIMQNLEVKSFSLEPDITVEKSPVV
SCELRPSTFHSQPDSSVLSLSGDEGNLASETLQKIQKAFSESGSDLHMVINHEQSSVTNTGEEVEFRDVT
VTESKGHDGSCAGEEENCPSERNFSPDQSPEFAREADEECYSTQMKVECEGLHSETPKADPLILQAFPGE
EPAEEPQSPRNQLSTPSRGNENGGESAGASGAPGEDESTCSVAVLSKPRPQRLSRQQSLVEKCDSVAPGA
LQVTEHGKVSDHIQWFNKLSLNEPNRGKVKSPLKFQRTPVRQSVRRINSLLEYGRQPVRQKLAIFGDAAS
PLVKSVSCDSALPSCVQNTSKGPTAPLITSGLEAQKSTSCNKSSVELTSKSFTKMKRHPDPLSASLGTPR
LCKQENKSNGHIKFPLDDLTNHERLKFVVNNNVAFSPGMKNRVVRKPSEKERVWYKGSPKNPIGKTQLLP
TSKPVDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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