NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16608.1 Public Mus musculus 2 Ltk 23 108 98 CCDS HistoryNCBI Gene:17005Re-query CCDS DB by CCDS ID:16608.1Re-query CCDS DB by GeneID:17005See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028759.12 ENSMUSP00000028759.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028759.12Link to Ensembl Protein Viewer:ENSMUSP00000028759.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028759Re-query CCDS DB by Protein ID:ENSMUSP00000028759
Original member Current member NCBI NM_203345.2 NP_976220.2 Accepted alive Link to Nucleotide Sequence:NM_203345.2Link to Protein Sequence:NP_976220.2Re-query CCDS DB by Nucleotide ID:NM_203345Re-query CCDS DB by Protein ID:NP_976220Link to BLAST:NP_976220.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_976220.2 888 P08923-1 888 100% 0 0

Chromosomal Locations for CCDS 16608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119751602 119751934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752066 119752156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752231 119752365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752497 119752598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752695 119752787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752926 119753023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119753114 119753243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119753427 119753491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119753615 119753705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119754172 119754364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119754578 119754673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119755131 119755283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119755615 119755713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119757979 119758161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119758247 119758403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119758524 119758661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119758756 119758906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119759295 119759466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119759557 119759700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119760252 119760294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2667 nt):
ATGGGCTGCTCCCACCGGCTGCTGCTGTGGCTGGGAGCTGCTGGAACTATTCTTTGCTCCAACTCGGAGT
TCCAGACACCTTTTCTAACACCTTCGCTTTTGCCGGTGCTGGTACTCAATTCCCAGGAGCAGAAAGTCAC
CCCCACACCCAGTAAATTGGAGCCAGCTTCCCTCCCAAATCCTCTAGGCACACGGGGGCCTTGGGTGTTT
AACACCTGTGGCGCCAGCGGCAGGAGCGGACCCACACAAACACAGTGCGATGGGGCATACACAGGAAGCA
GCGTGATGGTGACAGTGGGGGCTGCCGGGCCGCTCAAAGGCGTGCAGCTGTGGCGGGTGCCAGACACAGG
CCAGTATCTGATCTCCGCCTACGGAGCGGCGGGCGGCAAGGGCGCCCAAAACCACCTGTCACGGGCGCAC
GGCATCTTCCTCTCAGCAGTCTTCTTCCTCCGTCGCGGGGAGCCGGTGTACATCCTTGTGGGGCAGCAGG
GCCAGGACGCCTGTCCCGGAGGGAGCCCTGAGAGCCAACTCGTCTGTCTGGGAGAGTCTGGGGAGCATGC
AACCACCTATGGGACCGAAAGGATCCCAGGCTGGAGACGCTGGGCCGGCGGGGGCGGGGGTGGCGGAGGC
GCCACCTCCATCTTCCGGCTGCGCGCGGGGGAGCCAGAGCCGCTGCTGGTGGCGGCGGGAGGCGGCGGGA
GGTCCTACCGGAGGCGACCTGACCGCGGCCGGACTCAGGCCGTCCCCGAGAGGCTGGAGACCCGCGCGGC
GGCGCCGGGCAGCGGCGGGAGAGGAGGCGCGGCAGGTGGAGGGAGCGGCTGGACGTCGCGAGCCCACTCT
CCGCAGGCCGGACGCTCGCCGCGGGAAGGGGCCGAGGGCGGCGAGGGCTGCGCGGAGGCCTGGGCTGCGC
TCCGCTGGGCTGCGGCGGGAGGCTTCGGGGGCGGCGGCGGGGCCTGCGCGGCGGGCGGCGGTGGCGGCGG
CTACCGGGGCGGTGATACTTCTGAGTCTGACCTCCTCTGGGCTGATGGGGAAGATGGCACATCCTTTGTC
CACCCCAGTGGTGAGCTCTACCTACAGCCTCTGGCAGTCACAGAGGGCCATGGGGAGGTGGAGATCCGAA
AGCATCCCAACTGCAGTCACTGCCCTTTCAAAGACTGCCAGTGGCAGGCAGAGCTCTGGACGGCCGAATG
CACGTGCCCAGAGGGCACGGAGCTAGCTGTGGATAATGTCACTTGCATGGACCTGCCAACCACCGCAAGC
CCTCTGATCCTGATGGGAGCTGTAGTGGCAGCCTTGGCACTGAGTCTCCTAATGATGTGTGCAGTCCTGA
TTCTAGTGAACCAGAAGTGTCAGGGCCTGTGGGGGACCAGGCTGCCAGGCCCTGAGCTTGAGCTAAGCAA
GCTTCGATCCTCTGCCATCAGGACAGCACCCAACCCTTACTATTGTCAGGTGGGACTCAGTCCTGCCCAG
CCCTGGCCTTTGCCCCCAGGGCTCACTGAGGTTTCACCAGCCAATGTCACTCTACTCAGAGCCCTTGGCC
ATGGTGCCTTTGGGGAAGTGTACGAGGGACTAGTGACTGGTCTTCCTGGGGACTCCAGTCCTCTTCCAGT
GGCTATTAAGACTCTGCCAGAGCTCTGCTCCCATCAGGATGAGCTGGATTTTCTCATGGAGGCTCTGATC
ATCAGCAAGTTCAGCCATCAGAACATTGTACGCTGTGTGGGGCTCAGCTTTCGGTCTGCCCCGCGCCTCA
TTCTGCTGGAGCTGATGTCTGGTGGGGACATGAAGAGCTTTTTGAGGCACAGCAGACCACACCCAGGACA
ACTGGCACCTCTGACCATGCAGGACCTATTGCAGCTGGCCCAGGATATAGCCCAGGGCTGCCACTACCTG
GAGGAAAATCACTTCATTCACAGAGACATTGCTGCCCGTAACTGTCTGCTTAGCTGCAGTGGAGCCAGCC
GAGTGGCCAAGATTGGAGATTTTGGAATGGCAAGAGATATCTACCAGGCCAGTTATTATCGCAAGGGTGG
CCGGACCTTGCTCCCAGTCAAGTGGATGCCGCCAGAAGCTCTCCTGGAGGGCCTTTTCACATCCAAGACA
GACTCCTGGTCTTTTGGGGTCCTGCTCTGGGAGATCTTCTCACTGGGGTATATGCCCTACCCTGGACATA
CCAACCAGGAGGTTCTAGACTTCATTGCCACAGGGAACAGGATGGACCCTCCTAGGAACTGTCCTGGGCC
AGTGTACCGAATCATGACCCAGTGTTGGCAGCATCAGCCGGAGCTCCGCCCTGACTTTGGCAGCATCTTG
GAACGGATTCAGTACTGCACTCAGGACCCTGATGTGCTGAACTCACCCCTGCCCGTGGAACCTGGGCCCA
TTCTAGAGGAGGAAGAGGCCTCCAGGCTGGGAAACAGGTCACTGGAGGGTCTTAGATCCCCAAAGCCCCT
AGAGCTGAGTTCTCAGAACTTGAAGAGCTGGGGAGGAGGCCTTCTTGGCTCTTGGCTGCCCTCTGGCCTC
AAGACCCTCAAACCCAGGTGCCTCCAACCTCAGAACATTTGGAACCCCACCTATGGCTCCTGGACCCCAA
GGGGCCCCCAGGGTGAAGATACAGGCATTGAACACTGCAATGGCTCCTCCTCAAGTTCCATTCCAGGCAT
CCAGTAG

Translation (888 aa):
MGCSHRLLLWLGAAGTILCSNSEFQTPFLTPSLLPVLVLNSQEQKVTPTPSKLEPASLPNPLGTRGPWVF
NTCGASGRSGPTQTQCDGAYTGSSVMVTVGAAGPLKGVQLWRVPDTGQYLISAYGAAGGKGAQNHLSRAH
GIFLSAVFFLRRGEPVYILVGQQGQDACPGGSPESQLVCLGESGEHATTYGTERIPGWRRWAGGGGGGGG
ATSIFRLRAGEPEPLLVAAGGGGRSYRRRPDRGRTQAVPERLETRAAAPGSGGRGGAAGGGSGWTSRAHS
PQAGRSPREGAEGGEGCAEAWAALRWAAAGGFGGGGGACAAGGGGGGYRGGDTSESDLLWADGEDGTSFV
HPSGELYLQPLAVTEGHGEVEIRKHPNCSHCPFKDCQWQAELWTAECTCPEGTELAVDNVTCMDLPTTAS
PLILMGAVVAALALSLLMMCAVLILVNQKCQGLWGTRLPGPELELSKLRSSAIRTAPNPYYCQVGLSPAQ
PWPLPPGLTEVSPANVTLLRALGHGAFGEVYEGLVTGLPGDSSPLPVAIKTLPELCSHQDELDFLMEALI
ISKFSHQNIVRCVGLSFRSAPRLILLELMSGGDMKSFLRHSRPHPGQLAPLTMQDLLQLAQDIAQGCHYL
EENHFIHRDIAARNCLLSCSGASRVAKIGDFGMARDIYQASYYRKGGRTLLPVKWMPPEALLEGLFTSKT
DSWSFGVLLWEIFSLGYMPYPGHTNQEVLDFIATGNRMDPPRNCPGPVYRIMTQCWQHQPELRPDFGSIL
ERIQYCTQDPDVLNSPLPVEPGPILEEEEASRLGNRSLEGLRSPKPLELSSQNLKSWGGGLLGSWLPSGL
KTLKPRCLQPQNIWNPTYGSWTPRGPQGEDTGIEHCNGSSSSSIPGIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH