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Report for CCDS16609.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16609.1 Public Mus musculus 2 Ltk 23 108 98 CCDS HistoryNCBI Gene:17005Re-query CCDS DB by CCDS ID:16609.1Re-query CCDS DB by GeneID:17005See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16609.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082130.12 ENSMUSP00000080774.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082130.12Link to Ensembl Protein Viewer:ENSMUSP00000080774.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000082130Re-query CCDS DB by Protein ID:ENSMUSP00000080774
Original member Current member NCBI NM_206942.2 NP_996825.2 Accepted alive Link to Nucleotide Sequence:NM_206942.2Link to Protein Sequence:NP_996825.2Re-query CCDS DB by Nucleotide ID:NM_206942Re-query CCDS DB by Protein ID:NP_996825Link to BLAST:NP_996825.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996825.2 827 P08923-4 827 100% 0 0

Chromosomal Locations for CCDS 16609.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119751602 119751934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752066 119752156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752231 119752365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752497 119752598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752695 119752787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119752926 119753023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119753114 119753243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119753427 119753491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119753615 119753705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119754172 119754364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119754578 119754673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119755131 119755283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119755615 119755713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119758247 119758403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119758524 119758661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119758756 119758906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119759295 119759466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119759557 119759700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119760252 119760294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2484 nt):
ATGGGCTGCTCCCACCGGCTGCTGCTGTGGCTGGGAGCTGCTGGAACTATTCTTTGCTCCAACTCGGAGT
TCCAGACACCTTTTCTAACACCTTCGCTTTTGCCGGTGCTGGTACTCAATTCCCAGGAGCAGAAAGTCAC
CCCCACACCCAGTAAATTGGAGCCAGCTTCCCTCCCAAATCCTCTAGGCACACGGGGGCCTTGGGTGTTT
AACACCTGTGGCGCCAGCGGCAGGAGCGGACCCACACAAACACAGTGCGATGGGGCATACACAGGAAGCA
GCGTGATGGTGACAGTGGGGGCTGCCGGGCCGCTCAAAGGCGTGCAGCTGTGGCGGGTGCCAGACACAGG
CCAGTATCTGATCTCCGCCTACGGAGCGGCGGGCGGCAAGGGCGCCCAAAACCACCTGTCACGGGCGCAC
GGCATCTTCCTCTCAGCAGTCTTCTTCCTCCGTCGCGGGGAGCCGGTGTACATCCTTGTGGGGCAGCAGG
GCCAGGACGCCTGTCCCGGAGGGAGCCCTGAGAGCCAACTCGTCTGTCTGGGAGAGTCTGGGGAGCATGC
AACCACCTATGGGACCGAAAGGATCCCAGGCTGGAGACGCTGGGCCGGCGGGGGCGGGGGTGGCGGAGGC
GCCACCTCCATCTTCCGGCTGCGCGCGGGGGAGCCAGAGCCGCTGCTGGTGGCGGCGGGAGGCGGCGGGA
GGTCCTACCGGAGGCGACCTGACCGCGGCCGGACTCAGGCCGTCCCCGAGAGGCTGGAGACCCGCGCGGC
GGCGCCGGGCAGCGGCGGGAGAGGAGGCGCGGCAGGCGGTGATACTTCTGAGTCTGACCTCCTCTGGGCT
GATGGGGAAGATGGCACATCCTTTGTCCACCCCAGTGGTGAGCTCTACCTACAGCCTCTGGCAGTCACAG
AGGGCCATGGGGAGGTGGAGATCCGAAAGCATCCCAACTGCAGTCACTGCCCTTTCAAAGACTGCCAGTG
GCAGGCAGAGCTCTGGACGGCCGAATGCACGTGCCCAGAGGGCACGGAGCTAGCTGTGGATAATGTCACT
TGCATGGACCTGCCAACCACCGCAAGCCCTCTGATCCTGATGGGAGCTGTAGTGGCAGCCTTGGCACTGA
GTCTCCTAATGATGTGTGCAGTCCTGATTCTAGTGAACCAGAAGTGTCAGGGCCTGTGGGGGACCAGGCT
GCCAGGCCCTGAGCTTGAGCTAAGCAAGCTTCGATCCTCTGCCATCAGGACAGCACCCAACCCTTACTAT
TGTCAGGTGGGACTCAGTCCTGCCCAGCCCTGGCCTTTGCCCCCAGGGCTCACTGAGGTTTCACCAGCCA
ATGTCACTCTACTCAGAGCCCTTGGCCATGGTGCCTTTGGGGAAGTGTACGAGGGACTAGTGACTGGTCT
TCCTGGGGACTCCAGTCCTCTTCCAGTGGCTATTAAGACTCTGCCAGAGCTCTGCTCCCATCAGGATGAG
CTGGATTTTCTCATGGAGGCTCTGATCATCAGCAAGTTCAGCCATCAGAACATTGTACGCTGTGTGGGGC
TCAGCTTTCGGTCTGCCCCGCGCCTCATTCTGCTGGAGCTGATGTCTGGTGGGGACATGAAGAGCTTTTT
GAGGCACAGCAGACCACACCCAGGACAACTGGCACCTCTGACCATGCAGGACCTATTGCAGCTGGCCCAG
GATATAGCCCAGGGCTGCCACTACCTGGAGGAAAATCACTTCATTCACAGAGACATTGCTGCCCGTAACT
GTCTGCTTAGCTGCAGTGGAGCCAGCCGAGTGGCCAAGATTGGAGATTTTGGAATGGCAAGAGATATCTA
CCAGGCCAGTTATTATCGCAAGGGTGGCCGGACCTTGCTCCCAGTCAAGTGGATGCCGCCAGAAGCTCTC
CTGGAGGGCCTTTTCACATCCAAGACAGACTCCTGGTCTTTTGGGGTCCTGCTCTGGGAGATCTTCTCAC
TGGGGTATATGCCCTACCCTGGACATACCAACCAGGAGGTTCTAGACTTCATTGCCACAGGGAACAGGAT
GGACCCTCCTAGGAACTGTCCTGGGCCAGTGTACCGAATCATGACCCAGTGTTGGCAGCATCAGCCGGAG
CTCCGCCCTGACTTTGGCAGCATCTTGGAACGGATTCAGTACTGCACTCAGGACCCTGATGTGCTGAACT
CACCCCTGCCCGTGGAACCTGGGCCCATTCTAGAGGAGGAAGAGGCCTCCAGGCTGGGAAACAGGTCACT
GGAGGGTCTTAGATCCCCAAAGCCCCTAGAGCTGAGTTCTCAGAACTTGAAGAGCTGGGGAGGAGGCCTT
CTTGGCTCTTGGCTGCCCTCTGGCCTCAAGACCCTCAAACCCAGGTGCCTCCAACCTCAGAACATTTGGA
ACCCCACCTATGGCTCCTGGACCCCAAGGGGCCCCCAGGGTGAAGATACAGGCATTGAACACTGCAATGG
CTCCTCCTCAAGTTCCATTCCAGGCATCCAGTAG

Translation (827 aa):
MGCSHRLLLWLGAAGTILCSNSEFQTPFLTPSLLPVLVLNSQEQKVTPTPSKLEPASLPNPLGTRGPWVF
NTCGASGRSGPTQTQCDGAYTGSSVMVTVGAAGPLKGVQLWRVPDTGQYLISAYGAAGGKGAQNHLSRAH
GIFLSAVFFLRRGEPVYILVGQQGQDACPGGSPESQLVCLGESGEHATTYGTERIPGWRRWAGGGGGGGG
ATSIFRLRAGEPEPLLVAAGGGGRSYRRRPDRGRTQAVPERLETRAAAPGSGGRGGAAGGDTSESDLLWA
DGEDGTSFVHPSGELYLQPLAVTEGHGEVEIRKHPNCSHCPFKDCQWQAELWTAECTCPEGTELAVDNVT
CMDLPTTASPLILMGAVVAALALSLLMMCAVLILVNQKCQGLWGTRLPGPELELSKLRSSAIRTAPNPYY
CQVGLSPAQPWPLPPGLTEVSPANVTLLRALGHGAFGEVYEGLVTGLPGDSSPLPVAIKTLPELCSHQDE
LDFLMEALIISKFSHQNIVRCVGLSFRSAPRLILLELMSGGDMKSFLRHSRPHPGQLAPLTMQDLLQLAQ
DIAQGCHYLEENHFIHRDIAARNCLLSCSGASRVAKIGDFGMARDIYQASYYRKGGRTLLPVKWMPPEAL
LEGLFTSKTDSWSFGVLLWEIFSLGYMPYPGHTNQEVLDFIATGNRMDPPRNCPGPVYRIMTQCWQHQPE
LRPDFGSILERIQYCTQDPDVLNSPLPVEPGPILEEEEASRLGNRSLEGLRSPKPLELSSQNLKSWGGGL
LGSWLPSGLKTLKPRCLQPQNIWNPTYGSWTPRGPQGEDTGIEHCNGSSSSSIPGIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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