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Report for CCDS16622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16622.1 Public Mus musculus 2 Snap23 23 108 98 CCDS HistoryNCBI Gene:20619Re-query CCDS DB by CCDS ID:16622.1Re-query CCDS DB by GeneID:20619See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028743.9 ENSMUSP00000028743.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028743.9Link to Ensembl Protein Viewer:ENSMUSP00000028743.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028743Re-query CCDS DB by Protein ID:ENSMUSP00000028743
Original member Current member EBI ENSMUST00000110711.8 ENSMUSP00000106339.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110711.8Link to Ensembl Protein Viewer:ENSMUSP00000106339.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110711Re-query CCDS DB by Protein ID:ENSMUSP00000106339
Original member NCBI NM_001177793.1 NP_001171264.1 Updated not alive Link to Nucleotide Sequence:NM_001177793.1Link to Protein Sequence:NP_001171264.1Re-query CCDS DB by Nucleotide ID:NM_001177793Re-query CCDS DB by Protein ID:NP_001171264
Current member NCBI NM_001177793.2 NP_001171264.1 Accepted alive Link to Nucleotide Sequence:NM_001177793.2Link to Protein Sequence:NP_001171264.1Re-query CCDS DB by Nucleotide ID:NM_001177793Re-query CCDS DB by Protein ID:NP_001171264Link to BLAST:NP_001171264.1
Original member NCBI NM_009222.3 NP_033248.1 Updated not alive Link to Nucleotide Sequence:NM_009222.3Link to Protein Sequence:NP_033248.1Re-query CCDS DB by Nucleotide ID:NM_009222Re-query CCDS DB by Protein ID:NP_033248
Current member NCBI NM_009222.4 NP_033248.1 Accepted alive Link to Nucleotide Sequence:NM_009222.4Link to Protein Sequence:NP_033248.1Re-query CCDS DB by Nucleotide ID:NM_009222Re-query CCDS DB by Protein ID:NP_033248Link to BLAST:NP_033248.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171264.1 210 O09044 210 100% 0 0
NP_033248.1 210 O09044 210 100% 0 0

Chromosomal Locations for CCDS 16622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 120584309 120584365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120585151 120585192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120585556 120585604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120586159 120586276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120594801 120594956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120596643 120596787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120599276 120599341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGATAATCTGTCCCCAGAGGAAGTTCAGCTGCGGGCTCACCAGGTTACTGATGAGTCTCTGGAAAGCA
CA
AGGAGAATCCTGGGTTTAGCCATTGAGTCTCAGGATGCAGGAATCAAGACCATCACTATGCTGGATGA
G
CAAGGGGAACAACTAAATCGCATAGAAGAAGGCATGGACCAAATAAATAAAGACATGAGAGAGGCAGAG
AAG
ACTTTAACAGAACTCAACAAGTGTTGTGGCCTCTGCATCTGCCCTTGTAATAGGACAAAGAACTTTG
AG
TCTGGAAAGAACTATAAGGCAACATGGGGAGATGGTGGCGACAACTCACCTAGCAATGTAGTATCTAA
G
CAACCGAGCCGGATTACAAATGGTCAGCCTCAGCAAACTACAGGAGCAGCCAGTGGTGGATACATTAAA
CG
T
ATAACTAATGATGCCAGAGAAGATGAGATGGAAGAGAACCTGACTCAAGTGGGCAGCATCCTAGGCA
AC
CTAAAGAACATGGCTCTGGATATGGGCAATGAAATTGATGCTCAAAACCAGCAAATACAGAAGATCAC
A
GAAAAGGCTGACACCAACAAGAATCGTATTGACATTGCCAATACAAGAGCAAAGAAACTCATTGATAGT
TAA


Translation (210 aa):
MDNLSPEEVQLRAHQVTDESLESTRRILGLAIESQDAGIKTITMLDEQGEQLNRIEEGMDQINKDMREAE
K
TLTELNKCCGLCICPCN
RTKNFESGKNYKATWGDGGDNSPSNVVSKQPSRITNGQPQQTTGAASGGYIK
R
ITNDAREDEMEENLTQVGSILGNLKNMALDMGNEIDAQNQQIQKITEKADTNKNRIDIANTRAKKLIDS



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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