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Report for CCDS16637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16637.1 Public Mus musculus 2 Tubgcp4 23 108 98 CCDS HistoryNCBI Gene:51885Re-query CCDS DB by CCDS ID:16637.1Re-query CCDS DB by GeneID:51885See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16637.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039541.11 ENSMUSP00000044049.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039541.11Link to Ensembl Protein Viewer:ENSMUSP00000044049.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039541Re-query CCDS DB by Protein ID:ENSMUSP00000044049
Original member NCBI NM_153387.3 NP_700436.1 Updated not alive Link to Nucleotide Sequence:NM_153387.3Link to Protein Sequence:NP_700436.1Re-query CCDS DB by Nucleotide ID:NM_153387Re-query CCDS DB by Protein ID:NP_700436
Current member NCBI NM_153387.4 NP_700436.1 Accepted alive Link to Nucleotide Sequence:NM_153387.4Link to Protein Sequence:NP_700436.1Re-query CCDS DB by Nucleotide ID:NM_153387Re-query CCDS DB by Protein ID:NP_700436Link to BLAST:NP_700436.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700436.1 667 Q9D4F8 667 100% 0 0

Chromosomal Locations for CCDS 16637.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121171394 121171471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121173558 121173686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121175340 121175462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121175771 121175824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121176528 121176584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121178670 121178749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121183489 121183690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121184334 121184499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121184702 121184826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121188132 121188182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121188525 121188630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121189362 121189469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121189824 121189965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121192233 121192410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121193942 121194076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121195410 121195526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121196103 121196242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121196735 121196747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2004 nt):
ATGATTCACGAACTGCTCTTGGCCCTGAGTGGGTACCCAGGGTCCATTTTCACCTGGAACAAGCGGAGTG
GCCTGCAGGTTTCCCAGGATTTTCCATTTCTTCACCCCAGTGAGACTAGTGTCCTGAATCGACTCTGCCG
GCTTGGCACAGACTACATTCGATTCACTGAGTTCATTGAACAGTATACAGGCCATGTGCAGCAACAGGAC
CACCATCCTCCCCAGCAGGGCCAAGGGGGACTGCATGGGATCTACCTGAGAGCCTTCTGCACAGGGCTGG
ATTCAGTTTTGCAGCCGTATCGCCAAGCACTGCTTGATTTGGAACAAGAGTTCCTGGCTGACCCGCATCT
CTCCATATCACATGTCAATTACTCCTTAGATCAGTTCCAGCTCCTTTTCCCCTCTGTGATGGTTGTAGTG
GAGCAAATTAAAAGCCAAAAGATTCATGGCTGTCAAATCCTGGAAACAGTTTACAAACATAGCTGTGGGG
GCTTGCCTCCAGTCCGAAGCGCATTAGAAAAAATCCTGGCTGTGTGCCATGGAGTCATGTATAAACAGCT
CTCAGCCTGGATGCTGCATGGACTCCTTTTGGATCAGCATGAAGAGTTCTTCATCAAACAGGGCCCATCT
TCTGGTACTCTCAGTGCGCAGCTGGAAGAGGATGAGGAGGACCTGGGCATTGGAGGCCTGACAGGAAAAC
AGCTGAGAGAACTGCAGGACCTGCGCCTAATTGAGGAAGAGAATATGCTGGCCCCATCTCTGAAGCAGTT
TTCGCTGAGGGTAGAGATTTTACCATCATACATTCCAGTGAGAGTTGCTGAAAAAATCCTCTTTGTTGGA
GAATCTGTCCAAATGTTTGAGAATCAAAATGTGAACCTGACAAGGAAAGGGTCCATCTTGAAAAACCAGG
AGGACACATTCGCTGCCGAGCTGCACCGGCTCAAGCAGCAGCCACTCTTCAGCCTGGTGGATTTTGAGCA
GGTGGTAGATCGGATTCGTAGCACTGTGGCTGAGCACCTCTGGAAGCTAATGGTGGAAGAGTCAGATTTA
CTGGGTCAGCTGAAGATCATTAAAGACTTTTACCTGCTGGGACGAGGAGAACTGTTCCAGGCCTTCATTG
ACACAGCTCAGCACATGTTGAAAACACCACCCACTGCAGTAACAGAGCATGATGTGAATGTGGCCTTTCA
ACAGTCAGCACACAAGGTGTTGCTAGATGACGACAACCTTCTCCCTCTGTTGCACCTGACGATTGAGTAT
CATGGGAAGGACCACAAAGCAGATGCCACCCAGCCAAGAGAAGTGCCTTCTCGGGAGACATCCCCCCGGG
AAGCTCCTTCTTCCGGCTGGGCTGCTCTAGGGCTTTCCTACAAAGTACAGTGGCCACTGCACATTCTCTT
CACCCCAGCTGTCTTGGAAAAGTACAATGTTGTTTTTAAGTACTTACTGAGTGTGCGCCGTGTCCAAGCT
GAACTGCAGCACTGCTGGGCACTCCAGATGCAGCGCAAACACCTCAAATCTAACCAGACGGACGCAGTCA
AGTGGCGCCTAAGAAACCACATGGCCTTCTTGGTAGATAATCTTCAGTACTATCTCCAGGTAGATGTGCT
GGAGTCTCAGTTCTCACAGCTGCTTCATCAGATCAATTCTACGAGGGACTTTGAAAGCATCCGATTGGCA
CACGACCACTTCCTAAGCAATCTGCTGGCCCAATCCTTTATTTTGCTGAAGCCTGTGTTTCACTGCCTGA
ATGAAATCCTAGATCTCTGTCACAGTTTTTGTTCACTGGTCAGTCAGAACCTAGGTCCACTGGATGAGCG
CGGAGCGGCCCAGCTGAGCATTCTCGTGAAGGGCTTTAGTCGCCAGTCTTCACTCCTGTTCAAGATTCTT
TCCAGTGTTCGGAATCACCAGATCAACTCAGATTTGGCTCAGTTACTGCTCCGGCTAGACTATAATAAAT
ACTATACCCAGGCTGGTGGGACTCTGGGCAGTTTTGGGATGTAA

Translation (667 aa):
MIHELLLALSGYPGSIFTWNKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQD
HHPPQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLADPHLSISHVNYSLDQFQLLFPSVMVVV
EQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPS
SGTLSAQLEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVG
ESVQMFENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDL
LGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEY
HGKDHKADATQPREVPSRETSPREAPSSGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQA
ELQHCWALQMQRKHLKSNQTDAVKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLA
HDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFSRQSSLLFKIL
SSVRNHQINSDLAQLLLRLDYNKYYTQAGGTLGSFGM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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