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Report for CCDS16783.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16783.1 Public Mus musculus 2 Hao1 23 108 98 CCDS HistoryNCBI Gene:15112Re-query CCDS DB by CCDS ID:16783.1Re-query CCDS DB by GeneID:15112See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16783.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028704.2 ENSMUSP00000028704.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028704.2Link to Ensembl Protein Viewer:ENSMUSP00000028704.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028704Re-query CCDS DB by Protein ID:ENSMUSP00000028704
Original member Current member NCBI NM_010403.2 NP_034533.1 Accepted alive Link to Nucleotide Sequence:NM_010403.2Link to Protein Sequence:NP_034533.1Re-query CCDS DB by Nucleotide ID:NM_010403Re-query CCDS DB by Protein ID:NP_034533Link to BLAST:NP_034533.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034533.1 370 Q9WU19 370 100% 0 0

Chromosomal Locations for CCDS 16783.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 134498257 134498327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134500816 134500885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134500998 134501156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134505571 134505662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134522985 134523160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134530542 134530797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134548129 134548280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134554196 134554332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGTTGCCTCGACTGGTCTGCATCAGTGATTATGAACAGCATGTCCGATCAGTGCTTCAGAAGTCAGTGT
AT
GACTATTACAGGTCTGGGGCAAATGATCAGGAGACGTTAGCTGATAACATCCAAGCATTTTCTAGATG
G
AAGCTCTATCCACGGATGCTTCGCAACGTTGCTGATATCGATCTGTCAACTTCTGTTTTAGGACAGAGA
GTC
AGCATGCCAATATGTGTTGGGGCTACTGCCATGCAGTGCATGGCTCACGTGGACGGGGAGCTGGCCA
CT
GTGCGAGCCTGTCAGACCATGGGAACTGGCATGATGCTGAGTTCTTGGGCTACCTCCTCAATAGAAGA
A
GTGGCAGAAGCTGGCCCAGAGGCACTTCGCTGGATGCAACTGTACATCTACAAAGACCGTGAGATCAGC
AGA
CAGATAGTGAAGCGAGCTGAGAAGCAGGGTTACAAGGCCATATTTGTGACTGTGGACACCCCTTACC
TG
GGCAACCGCATTGATGACGTGCGGAACAGGTTCAAGCTGCCACCACAACTCAGGATGAAAAACTTTGA
A
ACCAATGATTTGGCATTTTCTCCTAAGGGAAATTTTGGAGACAACAGTGGACTTGCTGAATATGTGGCA
CAA
GCTATAGACCCATCTCTCAGCTGGGATGATATTACATGGCTCAGACGATTGACATCACTGCCTATTG
TT
GTAAAGGGCATTTTGAGAGGTGATGATGCCAAGGAAGCTGTTAAACATGGTGTGGATGGGATCTTGGT
G
TCGAATCATGGGGCGCGACAACTGGATGGGGTGCCAGCTACTATTGATGTCCTGCCAGAGATTGTTGAG
GCT
GTGGAAGGGAAGGTAGAAGTCTTCCTGGATGGGGGAGTAAGGAAAGGTACTGATGTTCTCAAAGCTC
TG
GCCCTAGGAGCCAAGGCCGTTTTTGTGGGAAGACCCATCATCTGGGGCTTGGCTTTCCAGGGGGAGAA
A
GGTGTTCAAGATGTCCTCGAGATATTGAAGGAAGAATTCCGACTGGCCATGGCTCTGAGTGGGTGCCAG
AAT
GTGAAAGTCATCGACAAGACATTGGTGAGGAAAAATCCTTTGGCTGTTTCCAAGATCTGA


Translation (370 aa):
MLPRLVCISDYEQHVRSVLQKSVYDYYRSGANDQETLADNIQAFSRWKLYPRMLRNVADIDLSTSVLGQR
V
SMPICVGATAMQCMAHVDGELATVR
ACQTMGTGMMLSSWATSSIEEVAEAGPEALRWMQLYIYKDREIS
R
QIVKRAEKQGYKAIFVTVDTPYLGNRIDDVRNRFKLPPQL
RMKNFETNDLAFSPKGNFGDNSGLAEYVA
Q
AIDPSLSWDDITWLRRLTSLPIVVKGILR
GDDAKEAVKHGVDGILVSNHGARQLDGVPATIDVLPEIVE
A
VEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIIWGLAFQ
GEKGVQDVLEILKEEFRLAMALSGCQ
N
VKVIDKTLVRKNPLAVSKI




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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