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Report for CCDS16788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16788.1 Public Mus musculus 2 Plcb4 23 108 98 CCDS HistoryNCBI Gene:18798Re-query CCDS DB by CCDS ID:16788.1Re-query CCDS DB by GeneID:18798See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035646.10 ENSMUSP00000038409.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035646.10Link to Ensembl Protein Viewer:ENSMUSP00000038409.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035646Re-query CCDS DB by Protein ID:ENSMUSP00000038409
Original member Current member EBI ENSMUST00000110109.7 ENSMUSP00000105736.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110109.7Link to Ensembl Protein Viewer:ENSMUSP00000105736.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110109Re-query CCDS DB by Protein ID:ENSMUSP00000105736
Original member Current member NCBI NM_001355154.1 NP_001342083.1 Accepted alive Link to Nucleotide Sequence:NM_001355154.1Link to Protein Sequence:NP_001342083.1Re-query CCDS DB by Nucleotide ID:NM_001355154Re-query CCDS DB by Protein ID:NP_001342083Link to BLAST:NP_001342083.1
Original member Current member NCBI NM_013829.3 NP_038857.1 Accepted alive Link to Nucleotide Sequence:NM_013829.3Link to Protein Sequence:NP_038857.1Re-query CCDS DB by Nucleotide ID:NM_013829Re-query CCDS DB by Protein ID:NP_038857Link to BLAST:NP_038857.1

Chromosomal Locations for CCDS 16788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 135877398 135877481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135907499 135907579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135908350 135908409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135910101 135910244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135929955 135930034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135932249 135932302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135938260 135938341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135939210 135939310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135939947 135940004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135947046 135947154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135950212 135950422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135951993 135952086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135954346 135954425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135954915 135954999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135958055 135958145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135958642 135958737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135961719 135961819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135967025 135967166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135967917 135968001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135968321 135968445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135970394 135970445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135971758 135971860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135972912 135973076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135976099 135976303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135982033 135982121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135982976 135983126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135987480 135987529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135987837 135987902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135994294 135994409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135998677 135998752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136000134 136000309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136002559 136002660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136007340 136007397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136007823 136007909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 136012966 136013034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3528 nt):
ATGGCCAAACCTTACGAATTTAACTGGCAGAAGGAAGTGCCCTCTTTCTTGCAAGAAGGAGCAGTTTTTG
ACAGATACGAAGAGGAATCTTTTGTGTTTGAGCCCAACTGCCTCTTCAAAGTAGATGAATTCGGCTTCTT
CCTGACGTGGAAGAGTGAAGGCAAGGAAGGACAAGTGCTAGAATGTTCCCTCATCAACAGTATTCGCCAA
GCAGCCATACCAAAGGATCCCAAAATCCTGGCTGCTCTCGAAGCTGTTGGAAAATCTGAAAATGATCTGG
AAGGGCGGATATTGTGTGTCTGCAGCGGCACGGATCTGGTGAATATCGGCTTCACTTACATGGTGGCTGA
AAATCCAGAAGTAACTAAGCAATGGGTAGAAGGCCTGAGATCGATCATTCACAACTTCAGGGCAAACAAC
GTCAGTCCGATGACATGCCTCAAGAAACACTGGATGAAACTGGCCTTTCTGACCAACACAACTGGTAAAA
TCCCAGTGAGGAGTATCACTAGAACCTTCGCATCAGGGAAAACAGAAAAGGTGATCTTTCAAGCCCTCAA
GGAACTAGGTCTTCCCAGTGGAAAGAATGATGAAATTGAACCTGCTGCATTTACTTATGAAAAGTTCTAT
GAACTGACACAAAAGATTTGTCCTCGGACAGATATAGAAGATCTTTTTAAAAAAATCAATGGAGACAAAA
CTGATTATTTAACGGTAGACCAATTAGTGAGCTTTCTAAACGAACATCAGCGAGATCCTCGGCTGAATGA
AATTTTATTCCCATTTTATGATGCTAAAAGAGCAATGCAGATCATTGAAATGTATGAGCCTGATGAAGAG
CTGAAGAAAAAAGGCCTCATATCCAGTGATGGATTCTGCAGATATCTGATGTCAGATGAAAATGCCCCTG
TCTTCTTAGATCGCTTAGAACTTTACCAGGAGATGGACCACCCGCTGGCTCATTACTTCATCAGTTCCTC
CCACAACACCTATCTCACTGGCCGGCAATTTGGAGGAAAGTCTTCAGTGGAAATGTACAGACAAGTTCTC
CTGGCTGGTTGCAGGTGTGTTGAACTTGACTGTTGGGATGGAAAAGGTGAAGATCAGGAACCGATAATAA
CTCACGGAAAAGCAATGTGTACAGACATCCTTTTTAAGGATGTAATCCAGGCCATCAAGGAAACGGCGTT
TGTCACATCAGAATACCCTGTCATTCTCTCCTTCGAAAACCACTGCAGCAAATATCAACAGTACAAGATG
TCCAAGTATTGTGAAGATCTATTTGGGGATCTCCTGTTGAAACAAGCACTTGAGTCGCATCCACTTGAAC
CAGGAAGGCCCTTGCCGTCTCCTAATGACCTCAAAAGAAAAATACTCATCAAGAATAAGAGGCTGAAGCC
TGAAGTTGAAAAGAAACAGCTTGAAGCTTTGAAAAGCATGATGGAAGCTGGAGAGTCAGCCGCCCCAGCT
AGCATCTTGGAAGACGACAATGAAGAGGAAATAGAAAGTGCTGATCAAGAGGAAGAAGCCCACCCTGAAT
ACAAATTTGGAAATGAACTTTCTGCCGATGACTACAGTCACAAGGAAGCGGTTGCAAACAGCGTCAAGAA
GGGCCTGGTCACCGTAGAGGATGAGCAAGCATGGATGGCATCTTATAAATACGTAGGTGCTACCACGAAC
ATCCATCCGTACTTGTCCACGATGATCAACTATGCCCAGCCCGTGAAGTTTCAAGGTTTCCACGTGGCTG
AAGAGCGCAATATTCACTATAACATGTCTTCTTTTAACGAGTCGGTTGGCCTTGGCTACTTGAAGACGCA
CGCGATTGAGTTTGTAAATTACAATAAGCGACAAATGAGCCGCATTTACCCCAAGGGAGGCCGAGTTGAT
TCCAGTAATTACATGCCTCAGATTTTCTGGAACGCTGGTTGCCAGATGGTTTCACTGAACTATCAAACCC
CAGATTTAGCGATGCAATTGAATCAAGGAAAATTTGAGTATAATGGATCATGCGGGTACCTTCTCAAGCC
AGATTTCATGAGGCGGCCTGATCGGACATTTGACCCCTTCTCTGAAACCCCTGTGGACGGGGTTATTGCA
GCCACGTGCTCAGTGCAGGTTATATCAGGGCAGTTCCTCTCAGATAAGAAGATCGGGACATACGTGGAAG
TCGATATGTACGGGCTGCCCACCGACACCATACGGAAAGAGTTCCGAACCCGCATGGTTATGAACAATGG
ACTCAACCCAGTGTATAATGAAGAATCGTTTGTGTTTCGAAAGGTGATCCTGCCTGACCTAGCTGTCCTG
AGAATCGCAGTCTACGATGACAACAACAAGCTAATTGGCCAGAGGATCCTTCCTTTGGATGGTCTCCAAG
CAGGCTACCGACACATCTCCCTGAGAAACGAGGGAAACAAACCATTATCACTGCCAACAATTTTCTGCAA
TATTGTTCTTAAAACATACGTGCCTGATGGATTTGGAGATATTGTGGATGCTTTATCCGATCCAAAGAAA
TTTCTTTCAATCACAGAGAAGAGAGCAGACCAAATGAGAGCAATGGGCATTGAAACTAGTGACATAGCAG
ATGTGCCCAGTGACACTTCCAAAAATGACAAGAAAGGCAAGGCCAACCCAGCCAAAGCGAACGTGACCCC
TCAGAGCAGCTCTGAGCTCAGACCAACCACCACAGCCGCCCTGGGCTCTGGCCAGGAAGCCAAGAAAGGT
ATTGAACTTATCCCTCAAGTGAGGATAGAAGATTTAAAGCAAATGAAGGCTTACTTGAAGCATTTAAAGA
AACAACAGAAGGAGTTAAACTCTTTAAAGAAGAAACATGCAAAGGAGCACAGTACCATGCAGAAGTTACA
CTGCACACAAGTTGACAAAATCGTGGCCCAGTATGACAAAGAGAAGTCGACTCATGAGAAAATCCTAGAG
AAGGCGATGAAGAAGAAGGGGGGAAGTAATTGTCTTGAAATAAAAAAAGAAACAGAAATTAAAATTCAGA
CCCTGACAACGGATCACAAATCTAAGGTCAAAGAGATTGTGGCCCAGCACACAAAGGAGTGGTCAGAAAT
GATCAACACTCACAGTGCGGAGGAGCAGGAAATCCGGGATCTGCACCTGAGCCAGCAGTGTGAGCTGCTG
AGAAAGCTGCTCATCAATGCTCATGAGCAGCAGACCCAGCAGCTGAAACTCTCCCATGACAGGGAAAGCA
AGGAGATGAGAGCCCATCAGGCTAAGATTTCTATGGAAAATAGCAAGGCCATCAGTCAAGATAAATCTAT
CAAGAACAAGGCAGAACGGGAAAGGCGAGTCAGGGAGTTGAACAGCAGCAACACTAAGAAGTTCCTAGAA
GAAAGAAAGAGACTGGCGATGAAGCAGTCAAAAGAAATGGATCAGTTGAAAAAAGTCCAGCTGGAGCACC
TAGAATTCCTAGAGAAACAGAACGAGCAGGCGAAGGAGATGCAGCAGATGGTGAAATTGGAAGCCGAGAT
GGACCGCAGACCAGCAACAGTAGTATGA

Translation (1175 aa):
MAKPYEFNWQKEVPSFLQEGAVFDRYEEESFVFEPNCLFKVDEFGFFLTWKSEGKEGQVLECSLINSIRQ
AAIPKDPKILAALEAVGKSENDLEGRILCVCSGTDLVNIGFTYMVAENPEVTKQWVEGLRSIIHNFRANN
VSPMTCLKKHWMKLAFLTNTTGKIPVRSITRTFASGKTEKVIFQALKELGLPSGKNDEIEPAAFTYEKFY
ELTQKICPRTDIEDLFKKINGDKTDYLTVDQLVSFLNEHQRDPRLNEILFPFYDAKRAMQIIEMYEPDEE
LKKKGLISSDGFCRYLMSDENAPVFLDRLELYQEMDHPLAHYFISSSHNTYLTGRQFGGKSSVEMYRQVL
LAGCRCVELDCWDGKGEDQEPIITHGKAMCTDILFKDVIQAIKETAFVTSEYPVILSFENHCSKYQQYKM
SKYCEDLFGDLLLKQALESHPLEPGRPLPSPNDLKRKILIKNKRLKPEVEKKQLEALKSMMEAGESAAPA
SILEDDNEEEIESADQEEEAHPEYKFGNELSADDYSHKEAVANSVKKGLVTVEDEQAWMASYKYVGATTN
IHPYLSTMINYAQPVKFQGFHVAEERNIHYNMSSFNESVGLGYLKTHAIEFVNYNKRQMSRIYPKGGRVD
SSNYMPQIFWNAGCQMVSLNYQTPDLAMQLNQGKFEYNGSCGYLLKPDFMRRPDRTFDPFSETPVDGVIA
ATCSVQVISGQFLSDKKIGTYVEVDMYGLPTDTIRKEFRTRMVMNNGLNPVYNEESFVFRKVILPDLAVL
RIAVYDDNNKLIGQRILPLDGLQAGYRHISLRNEGNKPLSLPTIFCNIVLKTYVPDGFGDIVDALSDPKK
FLSITEKRADQMRAMGIETSDIADVPSDTSKNDKKGKANPAKANVTPQSSSELRPTTTAALGSGQEAKKG
IELIPQVRIEDLKQMKAYLKHLKKQQKELNSLKKKHAKEHSTMQKLHCTQVDKIVAQYDKEKSTHEKILE
KAMKKKGGSNCLEIKKETEIKIQTLTTDHKSKVKEIVAQHTKEWSEMINTHSAEEQEIRDLHLSQQCELL
RKLLINAHEQQTQQLKLSHDRESKEMRAHQAKISMENSKAISQDKSIKNKAERERRVRELNSSNTKKFLE
ERKRLAMKQSKEMDQLKKVQLEHLEFLEKQNEQAKEMQQMVKLEAEMDRRPATVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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