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Report for CCDS17036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17036.1 Public Mus musculus 2 Sdc4 23 108 98 CCDS HistoryNCBI Gene:20971Re-query CCDS DB by CCDS ID:17036.1Re-query CCDS DB by GeneID:20971See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17036.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017153.3 ENSMUSP00000017153.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017153.3Link to Ensembl Protein Viewer:ENSMUSP00000017153.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000017153Re-query CCDS DB by Protein ID:ENSMUSP00000017153
Original member Current member NCBI NM_011521.2 NP_035651.1 Accepted alive Link to Nucleotide Sequence:NM_011521.2Link to Protein Sequence:NP_035651.1Re-query CCDS DB by Nucleotide ID:NM_011521Re-query CCDS DB by Protein ID:NP_035651Link to BLAST:NP_035651.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035651.1 198 O35988 198 100% 0 0

Chromosomal Locations for CCDS 17036.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164426086 164426237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164428893 164429088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164429680 164429726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164431187 164431313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164443090 164443164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGCGCCTGCCTGCCTGCTTGCGCCGCTGCTGCTGCTGCTCCTCGGAGGCTTCCCCTTGGTCCCCGGAG
AGTCGATTCGAGAGACAGAGGTCATCGACCCCCAGGACCTCCTGGAAGGCAGATACTTCTCTGGAGCCCT
CCCCGACGACGAAGATGCTGGCGGCTCGGATGACTTTGAGCTCTCGGGTTCTGGAGATCTGGATGACACG
GAGGAGCCCAGGCCCTTCCCTGAAGTGATTGAGCCCTTGGTGCCACTGGATAACCACATCCCTGAGAATG
CACAGCCTGGCATCCGTGTCCCCTCAGAGCCCAAGGAACTGGAAGAGAATGAGGTCATTCCTAAAAGGGC
CCCCTCCGACGTGGGGGATGACATGTCCAACAAAGTATCCATGTCCAGCACTGCCCAGGGCAGCAACATC
TTTGAGAGAACTGAGGTCTTGGCAGCTCTGATCGTGGGCGGCGTGGTAGGCATCCTCTTTGCCGTTTTCC
TGATCCTGCTGCTGGTGTACCGCATGAAGAAGAAGGACGAAGGCAGTTACGACTTGGGCAAGAAACCCAT
CTACAAAAAAGCCCCCACCAATGAGTTCTACGCATGA

Translation (198 aa):
MAPACLLAPLLLLLLGGFPLVPGESIRETEVIDPQDLLEGRYFSGALPDDEDAGGSDDFELSGSGDLDDT
EEPRPFPEVIEPLVPLDNHIPENAQPGIRVPSEPKELEENEVIPKRAPSDVGDDMSNKVSMSSTAQGSNI
FERTEVLAALIVGGVVGILFAVFLILLLVYRMKKKDEGSYDLGKKPIYKKAPTNEFYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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