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Report for CCDS17063.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17063.1 Public Mus musculus 2 Pltp 23 108 98 CCDS HistoryNCBI Gene:18830Re-query CCDS DB by CCDS ID:17063.1Re-query CCDS DB by GeneID:18830See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17063.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059954.13 ENSMUSP00000061519.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059954.13Link to Ensembl Protein Viewer:ENSMUSP00000061519.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000059954Re-query CCDS DB by Protein ID:ENSMUSP00000061519
Original member Current member EBI ENSMUST00000109316.7 ENSMUSP00000104939.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109316.7Link to Ensembl Protein Viewer:ENSMUSP00000104939.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109316Re-query CCDS DB by Protein ID:ENSMUSP00000104939
Original member NCBI NM_011125.2 NP_035255.1 Updated not alive Link to Nucleotide Sequence:NM_011125.2Link to Protein Sequence:NP_035255.1Re-query CCDS DB by Nucleotide ID:NM_011125Re-query CCDS DB by Protein ID:NP_035255
Current member NCBI NM_011125.3 NP_035255.1 Accepted alive Link to Nucleotide Sequence:NM_011125.3Link to Protein Sequence:NP_035255.1Re-query CCDS DB by Nucleotide ID:NM_011125Re-query CCDS DB by Protein ID:NP_035255Link to BLAST:NP_035255.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035255.1 493 P55065 493 100% 0 0

Chromosomal Locations for CCDS 17063.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164839706 164839828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164840114 164840190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164840321 164840384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164840495 164840537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164844435 164844502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164844595 164844759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164846594 164846653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164846740 164846916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164851513 164851604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164852473 164852536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164852617 164852680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164854266 164854421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164854927 164855055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164856704 164856803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164856887 164856986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGTCCTGCTCTGGGCCCTCTTCCTAGCGCTCCTGGCAGGTGCCCACGCCGAGCTCCCGGGCTGCAAGA
TCCGCGTCACCTCCGCGGCTCTGGATCTGGTGAAGCAGGAAGGCCTGCGCTTTCTGGAACAAGAGCTGGA
GACCATCACCATCCCAGACGTGTACGGCGCAAAGGGCCACTTTTACTACAATATCTCGGACGTGAGGGTC
ACACAGCTGCACCTGATATCCTCGGAACTCCACTTCCAGCCAGACCAAGATCTGCTGCTGAACATCTCCA
ACGCATCCTTGGGGCTGCACTTCCGGAGGCAGCTACTCTACTGGTTCTTATATGATGGGGGCTACATCAA
TGCCTCGGCGGAGGGTGTGTCCATCCGAACAGGTCTACAGCTCTCCCAGGATTCCAGTGGTCGGATTAAA
GTGTCCAATGTCTCCTGCGAGGCCTCTGTGTCTAAAATGAATATGGCCTTCGGGGGAACCTTCAGGAGGA
TGTATAACTTTTTCTCCACGTTCATCACTTCTGGGATGCGGTTCCTCCTCAACCAGCAGATCTGCCCTGT
GCTCTACCATGCTGGGACGGTGTTGCTCAACTCCCTCCTGGACACAGTGCCCGTGCGCAGTTCTGTGGAT
GATCTCGTGGGCATCGATTACTCCCTTCTGAAGGATCCTGTGGTCTCCAACGGCAACCTGGATATGGAAT
TCCGGGGAGCATTCTTCCCTCTGAAGGAGGACAACTGGAGCCTCCCCAACAGGGCGGTGGAGCCTCAGCT
GGAGGACGACGAGAGGATGGTGTACGTGGCCTTTTCCGAGTTCTTCTTTGACTCTGCCATGGAGAGCTAC
TTCCAGGCTGGAGCGCTGCAGCTGACACTTGTTGGGGACAAGGTGCCGAGTGACCTGGACATGCTTCTGA
GGGCCACCTACTTTGGGAGCATTGTTCTCCTGAGTCCGACAGTGATTAACTCCCCACTGAAGCTGAAGCT
AGAGGCCACGAGCCCTCCACGTTGTACCATCAAGCCGTCAGGCACCACCATCTCCATCACCGCCAGCGTC
ACCATCACCTTGGCCCCGCCCATGTTGCCCGAAGTGGAGCTGTCCAAGATGATCATGGAAGGCCGTCTCA
GTGCTAAGTTGACACTCCGGGGCAAGGCGCTGCGAGTGAAGCTGGACCTTCGAAGGTTTCAAATCTACTC
AAATCAGTCTGCGCTGGAGTCTCTGGCGCTGATCCCACTGCAGGCCCCACTGAAGACACTGCTGCAAATC
GGAGTGATGCCTTTGCTGAACGAGCGTACCTGGCGTGGGGTGCAGATCCCCCTTCCTGAGGGTATCAACT
TCGTGCGTGAGGTGGTGACCAACCACGCGGGCTTCGTCACTGTTGGGGCTGACCTCCACTTTGCCAAAGG
GCTTCGAGAAGTGATTGACAAGAACCGTCCTGCAGACGTTGCGGCCTCCCATGTCCCCCCACCCTCTGCT
GCAGCTGCCTGA

Translation (493 aa):
MVLLWALFLALLAGAHAELPGCKIRVTSAALDLVKQEGLRFLEQELETITIPDVYGAKGHFYYNISDVRV
TQLHLISSELHFQPDQDLLLNISNASLGLHFRRQLLYWFLYDGGYINASAEGVSIRTGLQLSQDSSGRIK
VSNVSCEASVSKMNMAFGGTFRRMYNFFSTFITSGMRFLLNQQICPVLYHAGTVLLNSLLDTVPVRSSVD
DLVGIDYSLLKDPVVSNGNLDMEFRGAFFPLKEDNWSLPNRAVEPQLEDDERMVYVAFSEFFFDSAMESY
FQAGALQLTLVGDKVPSDLDMLLRATYFGSIVLLSPTVINSPLKLKLEATSPPRCTIKPSGTTISITASV
TITLAPPMLPEVELSKMIMEGRLSAKLTLRGKALRVKLDLRRFQIYSNQSALESLALIPLQAPLKTLLQI
GVMPLLNERTWRGVQIPLPEGINFVREVVTNHAGFVTVGADLHFAKGLREVIDKNRPADVAASHVPPPSA
AAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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