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Report for CCDS17274.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17274.1 Public Mus musculus 3 Fndc3b 23 108 98 CCDS HistoryNCBI Gene:72007Re-query CCDS DB by CCDS ID:17274.1Re-query CCDS DB by GeneID:72007See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17274.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046157.9 ENSMUSP00000041495.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046157.9Link to Ensembl Protein Viewer:ENSMUSP00000041495.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000046157Re-query CCDS DB by Protein ID:ENSMUSP00000041495
Original member Current member EBI ENSMUST00000195008.5 ENSMUSP00000141620.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195008.5Link to Ensembl Protein Viewer:ENSMUSP00000141620.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195008Re-query CCDS DB by Protein ID:ENSMUSP00000141620
Original member Current member NCBI NM_001356953.1 NP_001343882.1 Accepted alive Link to Nucleotide Sequence:NM_001356953.1Link to Protein Sequence:NP_001343882.1Re-query CCDS DB by Nucleotide ID:NM_001356953Re-query CCDS DB by Protein ID:NP_001343882Link to BLAST:NP_001343882.1
Original member Current member NCBI NM_173182.3 NP_775274.2 Accepted alive Link to Nucleotide Sequence:NM_173182.3Link to Protein Sequence:NP_775274.2Re-query CCDS DB by Nucleotide ID:NM_173182Re-query CCDS DB by Protein ID:NP_775274Link to BLAST:NP_775274.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343882.1 1207 Q6NWW9 1207 99.8343% 0 2
NP_775274.2 1207 Q6NWW9 1207 99.8343% 0 2

Chromosomal Locations for CCDS 17274.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 27419291 27419602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27426034 27426161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27428864 27429030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27439958 27440170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27451314 27451594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27456449 27456598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27456987 27457100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27458717 27458889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27459945 27460050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27461676 27461794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27463775 27463846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27465702 27465840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27467375 27467461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27468866 27469040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27470222 27470346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27488237 27488290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27491025 27491163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27498777 27498836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27501394 27501545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27508481 27508539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27537949 27538239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27541931 27542174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27556120 27556196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27620605 27620680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27642951 27643061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3624 nt):
ATGTACGTCACCATGATGATGACCGACCAGATCCCCCTGGAATTGCCACCTCTGCTCAATGGGGAGGTGG
CC
ATGATGCCCCACTTGGTGAACGGAGAAGCAGCTCAGCAGGTCATTCTTGTCCAAGTGAACCCAGGTGA
G
ACCTTTACCATCAGAGCCGAGGATGGGACACTTCAGTGCATCCAAGGACCTGCTGAAGTTCCCATGATG
TCA
CCCAATGGGTCCATTCCTCCTATCCATGTGCCTCCAGGTTATATCTCACAGGTGATTGAAGACAGCA
CC
GGAGTCCGCCGGGTGGTGGTCACACCGCAGTCTCCTGAGTGCTACCCACCGAGTTATCCCTCAGCCAT
G
TCTCCAACCCATCACCTGCCCCCTTATCTGACCCACCATCCACACTTCATCCAGAACTCGCACACCGCC
TAC
TACCCGCCCGTCACCGTGCCTGGAGATATGCCACCCCAGTTTTTCCCCCAGCCTCACCTTCCTCCCA
CA
ATATATAGCGAGCCAGAAATTATCCCCCTGTATGGAATGTCGAGCTACGTCACCCGAGAAGACCAGTA
C
AGCAAGCCTCCACATAAGAAGCTGAAGGACCGCCAGATCGACCGCCAGAACCGCCTCAACAGCCCACCT
TCC
ACCATCTACAAGAACAGCTGCGCCACAGTGTACAATGGCTACGGGAAAGGCCACAGTGGAGGGAGCA
GT
GGAGGTGGGGGAGGTGGCAGCGGCGGTGGACCTGGGATCAAGAAGACAGAGCGAAGAGCGAGGAGCAG
C
CCAAAATCCAGTGATTCTGACCTGCAAGAGTATGAGTTGGAAGTAAAGAGGGTGCAAGACATTCTTTCG
GGA
ATAGAGAAACCACAGGTGTCTAATATCCAGGCAAGAGCAGTTGTGCTGTCTTGGGCACCCCCTGTCG
GA
CTGTCCTGTGGACCCCATGGTGGTCTTTCCTTCCCTTACAGCTATGAGGTCGCCTTATCTGACAAAGG
G
CGAGATGGGAAATACAAGATCATTTACAGTGGAGAAGAGTTGGAGTGTAACCTGAAAGATCTCAGGCCT
GCC
ACGGATTACCATGTGAGGGTATATGCCGTGTACAATTCTGTCAAGGGATCCTGCTCCGAGCCAGTCA
GC
TTCACCACCCATAGCTGCGCACCAGAATGTCCCTTCCCTCCCAAGCTGGCACACAGGAGCAAAAGTTC
A
CTTACCCTGCAGTGGAAGGCTCCAATTGACAATGGTTCAAAAATCACCAGCTACCTTTTAGAATGGGAT
GAG
GGAAAGAGAAACAGTGGTTTCAGACAGTGTTTCTTTGGAAGCCAGAAGCACTGCAAACTGACAAAGC
TC
TGTCCAGCCATGGGCTACACGTTCAGGCTCGCTGCTCGGAACGACATCGGCACCAGTGGTTACAGCCA
G
GAGGTCGTGTGCTACACGTTGGGAAACATCCCGCAGATGCCCTTGGCACCCCGGCTTGTCCGAGCCGGC
GTC
ACCTGGATCACCCTGCAGTGGAGCAGGCCAGAAGGCTGCTCGCCTGAGGAAGTGATAACCTACACCC
TG
GACATTCAGGAGGATGAGAACGATAGCCATTTCCACCCAAAATACACTGGAGAGGACCTAACCTGTAC
T
GTGAAAAATCTCAAGCGAAGCACACAGTATAAATTCAGGCTGACTGCTTCCAACATGGAGGGGAAGAGC
TGC
CCAAGTGAAGTCCTGGTTTGTACAACCAGCCCCGACAGACCTGGCCCTCCAACCAGACCCCTCATTA
AA
GGACCTGTCACATCACATGGCTTCAGTGTCAAGTGGGATGCTCCAAAGGACAACGGTGGCTCAGAAAT
C
CTGAAGTATCTGCTGGAGATCACGGATGGAACTTCTGAAGCTGGGCAGTGGGAAGTGGCCTACAGTGGA
TCG
GCTACAGAGTATGTCTTTACCCATTTGAAACCAGGCACTTTGTACAAACTGCGAGCGTGCTGCATCA
GT
ACCGGTGGGCACAGTCAGTGTTCTGAAAGTCTCCCTGTCCGCACACTAAGCCTTGCACCAGGTCAGTG
C
CGACCACCGAGGGTTTTGGGTAGACCAAAGCACAAAGGAGTCCACTTAGAGTGGGATGTGCCTGCGTCT
GAA
AGTGGCTGTGAGGTCTCAGAATACAGTGTGGAAATGACGGAACCCGAGAATGTCGCCTCAGAGGTGT
AC
CATGGGCCTGAGCTGGAGTGCACGGTTGGCAACCTGCTGCCTGGAACTGTGTACCGCTTCAGAGTGCG
A
GCTCTGAATGACGGAGGGTACGGTCCCTACTCTGATGTGTCAGAAATCACCACTGCCGCAGGGCCCCCT
GGG
CAGTGCAGAGCACCGCGTGTCTCCTTCACGCCTGACGGATGCGTCCTGGTGGGCTGGGAGAGCCCTG
CG
AGCCCTGGTGCCGACATCTCCGAATACAGGTTGGAGTGGGGAGAAGATGAACAGTCCTTAGAACTCGT
T
TATCATGGTCCAGACACCTGCTTTGAGATGCGAGATCTGTTGCCTGCTGCACAGTATTGCTGCAGACTA
CAG
GCCTTCAATCCAGCAGGCGCAGGGCCATATAGTGAGCTTGTCCACTGCCAGACACCAGCCTCTGCCC
CC
GACCCTGTCTCCACTCTGTGTGTCCTGGAGGAGGAGCCCCCCAGTGCCCACCCAGACTCACCCTCTGT
G
TGCCTTGTACTGAACTGGGAAGAGCCGTGCAATAATGGGTCTGAAATCCTTGCTTATAACATCGATCTG
GGA
GACAGCTGCATTACTGTGGGCAACACTACCACACACGTGATGAAGAACCTCCTTCCAGAAACGACAT
AC
CGGATCAGAATTCAGGCTATCAATGAAATTGGAGTTGGACCATTTAGTCAGTTCATTAAAGCAAAAAC
T
CGGCCATTACCGCCTTCGCCTCCTAGGCTTGAGTGTGCTGCGTCTGGTCCTCAGAGCCTGAAGCTCAAG
TGG
GGAGACAGTAACTCCAAGACACATGCTGCTGGTGACATGGTGTACACACTACAGCTGGAAGACAGGA
AC
AAGAGGTTTATCTCAATCTACCGAGGACCCAGCCACACCTACAAGGTCCAGAGACTGACAGAGTTTAC
C
TGCTACTCCTTCAGGATCCAGGCAATGAGCGAGGCAGGGGAGGGGCCTTACTCAGAAACCTACACCTTC
AGC
ACAACCAAAAGCGTGCCTCCCACCCTCAAAGCACCTCGAGTGACGCAGTTAGAAGGGAATTCCTGTG
AA
ATCTTCTGGGAGACGGTACCACCGATGAGAGGCGACCCTGTGAGCTACGTTCTACAGGTGCTGGTTGG
A
AGAGACTCTGAGTACAAGCAGGTGTACAAGGGAGAAGAAGCCACATTCCAAATCTCAGGCCTCCAGAGC
AAC
ACAGATTACAGGTTCCGCGTGTGTGCCTGCCGCCGCTGTGTGGACACGTCTCAGGAGCTCAGTGGCG
CG
TTCAGCCCCTCTGCGGCTTTCATGTTACAACAGCGTGAGGTTATGCTTACAGGGGACCTGGGAGGCAT
G
GAAGAGGCCAAGATGAAGGGCATGATGCCCACCGACGAACAGTTTGCTGCACTCATCGTGCTTGGCTTC
GCG
ACCCTGTCCATTTTGTTTGCCTTTATATTACAGTACTTCTTAATGAAGTAA


Translation (1207 aa):
MYVTMMMTDQIPLELPPLLNGEVAMMPHLVNGEAAQQVILVQVNPGETFTIRAEDGTLQCIQGPAEVPMM
S
PNGSIPPIHVPPGYISQ
VIEDSTGVRRVVVTPQSPECYPPSYPSAMSPTHHLPPYLTHHPHFIQNSHTA
Y
YPPVTVPGDMPPQFFPQPHLPPTIYSEP
EIIPLYGMSSYVTREDQYSKPPHKKLKDRQIDRQNRLNSPP
S
TIYKNSCATVYNGYGKGHSGGSSGGGGGGSGGGPGIKKTERRARSSPKSSDSDLQ
EYELEVKRVQDILS
G
IEKPQ
VSNIQARAVVLSWAPPVGLSCGPHGGLSFPYSYEVALSDKGRDGKYKIIYSGEELECNLKDLRP
A
TDYHV
RVYAVYNSVKGSCSEPVSFTTHSCAPECPFPPKLAHRSKSSLTLQWKAPIDNGSKITSYLLEWD
E
GKRNSGFRQCFFGSQKHCKLTKLCPAMGYTFRLAARNDIGTSGYSQEVVCYTLGNIPQMPLAPRLVRAG
V
TWITLQWSRPEGCSPEEVITYTLDIQEDEN
DSHFHPKYTGEDLTCTVKNLKRSTQYKFRLTASNMEGKS
C
PSEVLVCTTSPDRPGPPTRPLIKGPVTSHGFSVKW
DAPKDNGGSEILKYLLEITDGTSEAGQWEVAYSG
S
ATEYVFTHLKPGTLYKLRACCISTGGHSQ
CSESLPVRTLSLAPGQCRPPRVLGRPKHKGVHLEWDVPAS
E
SGCEVSEYSVEMTEPENVASEVYHGPELECTVGNLLPGTVYRFRVRALNDGG
YGPYSDVSEITTAAGPP
G
QCRAPRVSFTPDGCVLVGWE
SPASPGADISEYRLEWGEDEQSLELVYHGPDTCFEMRDLLPAAQYCCRL
Q
AFNPAGAGPYSELVHCQTPASAPDPVSTLCVLEEEPPSAHPDSPSVCLVLNWEEPCNNGSEILAYNIDL
G
DSCITVGNTTTHVMKNLLPETTY
RIRIQAINEIGVGPFSQFIKAKTRPLPPSPPRLECAASGPQSLKLK
W
GDSNSKTHAAGDMVYTLQLEDRNK
RFISIYRGPSHTYKVQRLTEFTCYSFRIQAMSEAGEGPYSETYTF
S
TTKSVPPTLK
APRVTQLEGNSCEIFWETVPPMRGDPVSYVLQVLVGRDSEYKQVYKGEEATFQISGLQS
N
TDYRFRVCACRRCVDTSQELSGAFSPSAAFMLQQREVMLTGDLGGMEEAKMKGMMPTDEQFAALIVLGF
A
TLSILFAFILQYFLMK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser