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Report for CCDS17352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17352.1 Public Mus musculus 3 Exosc8 23 108 98 CCDS HistoryNCBI Gene:69639Re-query CCDS DB by CCDS ID:17352.1Re-query CCDS DB by GeneID:69639See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029316.15 ENSMUSP00000029316.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029316.15Link to Ensembl Protein Viewer:ENSMUSP00000029316.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000029316Re-query CCDS DB by Protein ID:ENSMUSP00000029316
Original member NCBI NM_027148.3 NP_081424.3 Updated not alive Link to Nucleotide Sequence:NM_027148.3Link to Protein Sequence:NP_081424.3Re-query CCDS DB by Nucleotide ID:NM_027148Re-query CCDS DB by Protein ID:NP_081424
Current member NCBI NM_027148.4 NP_081424.3 Accepted alive Link to Nucleotide Sequence:NM_027148.4Link to Protein Sequence:NP_081424.3Re-query CCDS DB by Nucleotide ID:NM_027148Re-query CCDS DB by Protein ID:NP_081424Link to BLAST:NP_081424.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081424.3 276 Q9D753 276 100% 0 0

Chromosomal Locations for CCDS 17352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 54728778 54728893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54729194 54729300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54729765 54729885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54731075 54731171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54731981 54732026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54732112 54732217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54732700 54732745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54733658 54733731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54734103 54734166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54734296 54734332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54735008 54735024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGCGGCTGGGTTCAAAACTGTGGAGCCGCTGGAGTATTACAGGAGATTTCTGAAGGAAAACTGCCGTC
CTGATGGAAGAGAACTTGGTGAATTCAGAGCCACAACTGTCAACATAGGTTCAATCAGTACAGCGGATGG
CTCTGCTCTCGTGAAGCTGGGGAATACCACGGTCATTTGTGGCGTTAAAGCAGAATTTGCAGCACCACCA
GTAGATGCCCCCGATAGAGGATATGTCGTCCCTAATGTGGATCTACCACCGCTGTGTTCTTCGAGGTTCC
GGACAGGACCTCCTGGGGAAGAGGCTCAAGTAACCAGCCAGTTCATTGCAGATGTCGTTGACAACTCACA
GGTGATTAAGAAAGAGGATTTATGCATTTCTCCAGGCAAGCTTGCTTGGGTTCTATACTGTGACCTCATT
TGTCTAGACTACGATGGGAACATTTTGGATGCCTGCACATTTGCTTTGTTAGCAGCTTTAAAGAATGTAC
AGTTGCCTGAAGTTACTATAAACGAAGAGACTGCTTTAGCCGAAGTCAATTTAAAGAAGAAAAGTTATTT
GAATGTTAGAACAAACCCAGTTGCTACTTCCTTTGCTGTGTTTGATGACACTCTACTGATAGTCGATCCT
ACCGGCGAGGAGGAGCACCTGTCCACAGGAACCCTAACCGTAGTCACGGACGAGGACGGCAAGCTGTGCT
GTCTTCACAAGCCAGGTGGGAGTGGGCTGACTGGAGCTAAACTTCAGGACTGCATGAGTCGAGCGGTAAC
GAGACACAAAGAAGTGAGCAAGCTACTGGATGAAGTAATTCAGAGCATGAGACACAAATGA

Translation (276 aa):
MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPP
VDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDLCISPGKLAWVLYCDLI
CLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNVRTNPVATSFAVFDDTLLIVDP
TGEEEHLSTGTLTVVTDEDGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVSKLLDEVIQSMRHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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