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Report for CCDS17396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17396.1 Public Mus musculus 3 Mlf1 23 108 98 CCDS HistoryNCBI Gene:17349Re-query CCDS DB by CCDS ID:17396.1Re-query CCDS DB by GeneID:17349See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17396.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077916.11 ENSMUSP00000077072.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077916.11Link to Ensembl Protein Viewer:ENSMUSP00000077072.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077916Re-query CCDS DB by Protein ID:ENSMUSP00000077072
Original member Current member NCBI NM_010801.3 NP_034931.2 Accepted alive Link to Nucleotide Sequence:NM_010801.3Link to Protein Sequence:NP_034931.2Re-query CCDS DB by Nucleotide ID:NM_010801Re-query CCDS DB by Protein ID:NP_034931Link to BLAST:NP_034931.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034931.2 267 Q9QWV4 267 100% 0 0

Chromosomal Locations for CCDS 17396.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 67374216 67374262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67384551 67384698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67392892 67392975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67393935 67394063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67395252 67395411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67397781 67397910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 67399702 67399807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGTTCCGGATGCTGAGCAGCAGCTTTGAGGATGACCCCTTCTTCGCTGATTCTTTTCTTGCACACCGAG
AAAGTATGCGCAACATGATGAGAAGTTTCTCTGAACCTCTTGGAAGAGACTTGCTCAGTATCTCTGATGG
TAGAGGAAGAACCCATAATCGTCGAGAACGTGATGATGGCGAAGATTCCTTAACTCATGCAGATGTCAAC
CCTTTTCAGACAATGGATCGGATGATGGCAAATATGCGAAGTGGTATACAGGAGTTACAAAGAAACTTTG
GCCAACTTTCAATGGATCCAAATGGGCATTCATTTTGTTCTTCCTCTGTTATGACCTATTCCAAAGTAGG
AGATGAACCACCAAAGGTGTTCCAGGCCTCAACTCAAACCCGAAGGGCTCCAGGAGGAGTAAAAGAAACC
AGAAAAGCAATGAGAGATTCTGACAGTGGACTAGAAAGAATGGCTGTTGGTCATCACATCCATGACCGAG
GTCATGTCATTAGGAAGTCAAAGAACAACAAGACTGGAGATGAAGAAGTCAACCAAGAGTTCATCAATAT
GAATGAAAGTGACGCTCATGCTTTTGATGATGAGTGGCAAAATGAAGTTCTGAAGTACAAGTCTATTGGA
CGGTCAGGAAACACTGGAATGCGAAGTGTGGGTCATGAGCATCCAGGGTCACGGGAACTCAAAAGGAGAG
AGAAAATTCATCGAAATTCAGCCATTGAGAGTGGAAGAAGATCAAACGTTTTTGTGGACAAACTCAATGT
GAAAGGATCACCTGTGAAAATCACCAAAAAATAA

Translation (267 aa):
MFRMLSSSFEDDPFFADSFLAHRESMRNMMRSFSEPLGRDLLSISDGRGRTHNRRERDDGEDSLTHADVN
PFQTMDRMMANMRSGIQELQRNFGQLSMDPNGHSFCSSSVMTYSKVGDEPPKVFQASTQTRRAPGGVKET
RKAMRDSDSGLERMAVGHHIHDRGHVIRKSKNNKTGDEEVNQEFINMNESDAHAFDDEWQNEVLKYKSIG
RSGNTGMRSVGHEHPGSRELKRREKIHRNSAIESGRRSNVFVDKLNVKGSPVKITKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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