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Report for CCDS17466.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17466.1 Public Mus musculus 3 Rhbg 23 108 98 CCDS HistoryNCBI Gene:58176Re-query CCDS DB by CCDS ID:17466.1Re-query CCDS DB by GeneID:58176See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17466.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171887.3 ENSMUSP00000130767.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171887.3Link to Ensembl Protein Viewer:ENSMUSP00000130767.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171887Re-query CCDS DB by Protein ID:ENSMUSP00000130767
Original member Current member NCBI NM_021375.3 NP_067350.2 Accepted alive Link to Nucleotide Sequence:NM_021375.3Link to Protein Sequence:NP_067350.2Re-query CCDS DB by Nucleotide ID:NM_021375Re-query CCDS DB by Protein ID:NP_067350Link to BLAST:NP_067350.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067350.2 455 Q8BUX5 455 100% 0 0

Chromosomal Locations for CCDS 17466.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88243380 88243448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88243593 88243666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88244525 88244646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88245133 88245266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88245436 88245573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88245815 88245981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88247432 88247579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88247687 88247837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88248277 88248463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88254469 88254646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGGCCCGCGTTCCCCGCCACCGGCGCCTGGTCCTGCCGCTGCTGTGCCTGCTCTTCCAAGGCGCCACTG
CCCTCCTCTTTGCTATCTTTGTCCGGTACAACCACGAAACCGACGCTGCCCTGTGGCACTGGGGCAACCA
CAGTAACGTGGACAACGAGTTTTACTTTCGCTACCCAAGCTTCCAGGATGTGCACGTCATGGTCTTCGTG
GGCTTTGGCTTCCTCATGGTCTTTCTACAGCGGTACGGCTTCAGCAGTGTGGGCTTTACCTTCCTCGTGG
CCAGCCTCACCCTGCAGTGGGCCACACTGCTCCAAGGCTTCCTCCACTCTTTCCACGGTGGCCACATCCA
TGTTGGCGTGGAGAGTTTGATCAACGCTGACTTCTGCGCGGGAGCTGTGCTCATCTCTTTCGGGGCTGTT
CTGGGCAAGACTGGGCCAGCCCAGCTGCTGCTAATGGCTCTACTGGAGGCAGTGCTGTTTAGCGTCAACG
AGTTTATACTACTCAGTCTCCTGGGGGTGAGAGATGCTGGAGGGTCCATGACAATTCACACATTTGGGGC
CTACTTCGGGCTGTTCCTCTCATGGGTCCTCTACAGATCCCAGCTGGAGAAGAGCAGGCATCGCCAGAGC
TCTGTCTACAACTCTGACCTCTTTGCCATGATCGGGACCATCTTCCTGTGGGTTTTCTGGCCCAGCTTCA
ACTCCGCGCCGACAGCGCTGGGGGATGGGCAGCATCGGACCGTGGTCAACACATACTATTCACTCACCGC
AAGCACCCTCAGTACTTTCGCCTTGTCAGCCCTTGTCAGTGGAGATGGACGACTGGACATGGTCCACGTC
CAGAACGCAGCACTGGCTGGAGGTGTTGTGGTGGGGACATCAAGTGAGATGATGCTGACACCCTTTGGGG
CGCTGGCAGCTGGCTTCCTGGCTGGGACTGTCTCCACACTGGGGTATAAGTTCTTTACGCCTATCCTTGA
ATCCAGATTTAAACTGCAAGACACATGTGGTGTTCACAACCTCCATGGGATGCCAGGGGTCCTGGGGGCC
ATCCTGGGAGTCGTAGTGGCTGCACTGGCCACCCACGAAGCTTATGGAGATGGCCTGCAGAGTGTGTTTC
CACTCATAGCCAAGGGTCAGCGGAGTGCCACGTCTCAGGCCGTGTATCAGCTCTTCGGAATGTTTGTCAC
ACTGGTGTTTGCCTCTGTGGGTGGCAGCCTTGGAGGGCTCCTGCTGCGGCTCCCCTTTCTGGACTCCCCT
CCAGACTCCCAATGCTTCGAGGACCAGGTTTACTGGGAGGTACCTGGAGAGCAGGAGACTGAGACCCAGA
GGCCTCTGAGGGGTGGGGAGTCAGACACCCGGGCCTAA

Translation (455 aa):
MARVPRHRRLVLPLLCLLFQGATALLFAIFVRYNHETDAALWHWGNHSNVDNEFYFRYPSFQDVHVMVFV
GFGFLMVFLQRYGFSSVGFTFLVASLTLQWATLLQGFLHSFHGGHIHVGVESLINADFCAGAVLISFGAV
LGKTGPAQLLLMALLEAVLFSVNEFILLSLLGVRDAGGSMTIHTFGAYFGLFLSWVLYRSQLEKSRHRQS
SVYNSDLFAMIGTIFLWVFWPSFNSAPTALGDGQHRTVVNTYYSLTASTLSTFALSALVSGDGRLDMVHV
QNAALAGGVVVGTSSEMMLTPFGALAAGFLAGTVSTLGYKFFTPILESRFKLQDTCGVHNLHGMPGVLGA
ILGVVVAALATHEAYGDGLQSVFPLIAKGQRSATSQAVYQLFGMFVTLVFASVGGSLGGLLLRLPFLDSP
PDSQCFEDQVYWEVPGEQETETQRPLRGGESDTRA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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