NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17470.1 Public Mus musculus 3 Tmem79 23 108 98 CCDS HistoryNCBI Gene:71913Re-query CCDS DB by CCDS ID:17470.1Re-query CCDS DB by GeneID:71913See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17470.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001456.10 ENSMUSP00000001456.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001456.10Link to Ensembl Protein Viewer:ENSMUSP00000001456.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001456Re-query CCDS DB by Protein ID:ENSMUSP00000001456
Original member Current member EBI ENSMUST00000107552.1 ENSMUSP00000103176.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107552.1Link to Ensembl Protein Viewer:ENSMUSP00000103176.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107552Re-query CCDS DB by Protein ID:ENSMUSP00000103176
Original member Current member EBI ENSMUST00000107553.7 ENSMUSP00000103177.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107553.7Link to Ensembl Protein Viewer:ENSMUSP00000103177.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107553Re-query CCDS DB by Protein ID:ENSMUSP00000103177
Original member NCBI NM_024246.5 NP_077208.1 Updated not alive Link to Nucleotide Sequence:NM_024246.5Link to Protein Sequence:NP_077208.1Re-query CCDS DB by Nucleotide ID:NM_024246Re-query CCDS DB by Protein ID:NP_077208
Current member NCBI NM_024246.6 NP_077208.1 Accepted alive Link to Nucleotide Sequence:NM_024246.6Link to Protein Sequence:NP_077208.1Re-query CCDS DB by Nucleotide ID:NM_024246Re-query CCDS DB by Protein ID:NP_077208Link to BLAST:NP_077208.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077208.1 391 Q9D709 391 100% 0 0

Chromosomal Locations for CCDS 17470.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88329719 88329932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88332440 88332653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88332892 88333639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGACAGAACCGGAGACACTGGCCCTGCTGGACATGAAGGAACCCGAGACTCCAGAGAAGAGCCCACCGC
AGGCTTTAGTCCTGCAGTCAGAGGAAGAAGGTGGGACTGAGTCCCCTGGAACTGAGTCGCTCAGAGTGGG
GTCTTCAGTAGGGTCTCCTATAGTCAGAGAGGGGCCTGAGGATGGTCCAGACAGCACAATAAGTGAGGCT
GCCACTTTACCCTGGGGAACTGACCCCCATCCTAGCGCCCCACTTCCGGATCCCCCGGGCTGGCGAGATA
TTGAACCAGAGCCCCTAGAGTCAGAGGCACCTACTAAGTCGGAGGAGCCATTCAAAGAGGATGCCAACCT
GCTCCCCGAGAAGACAGTTAGGGCCTTCGTGCCCATTGATCTACAGTGCATCGAGCGGAAGCCACAGGAG
GAGCGCATCCTGCATCGCGACGCTGGACCAGGCGAGCTCAGGAATTTCCTGCCAGCTCGACTCAGCCACC
CTGAGCCCCCAGAGCGCAAGTGGGCTGAGGCCGTGGTGAGACCCCCTGGCCGGTCCTGCGGGGGCTGTGG
AAGCTGTGGAGGTCGTGAGGCACTGAGAGCTGTCGCCTCGGTGGTGGCGGCCCTCATCTTCTTCCCCTGT
CTGCTGTACGGAGCATACGCCTTCCTGCCTTTCGATGCCCCGAGGCTGCCCACCATGAGCTCCCGCTTGG
TTTACACCCTTCGCTGTGGGGTCTTTGCCACCTTTCCCATCGTACTCGGGCTCCTTGTGTACGGGCTGAG
CCTATTGTGCTTTTCTGCGCTTCGGCCCTTCGGCGAGCCGAGGCGGGAAGTGGAGATCCACCGGCAGTAC
GTGGCCCAGTCTGTGCAGCTCTTCATCCTCTACTTCTTTAACCTGGCTGTGCTTTCCACCTATCTGCCCC
AGGACACCCTCAAGCTGCTCCCGCTGCTCACCGGTCTCTTTGCCATATCTCGGCTGATATACTGGTTGAC
CTTTGCTGTGGGCCGCTCCTTCCGAGGCTTTGGCTATGGCCTGACTTTCCTGCCACTCTTGGCCATGCTG
GTGTGGAACCTCTATTACATGTTTGTGGTGGAGCCAGAGCGCATGCTCACTGCCTCCGAGAGCCGCTTGG
ACTACCCTGACCATGCTCGGTCTGTTTCCGACTACAGGCCCCGCTCATGGGGCTGA

Translation (391 aa):
MTEPETLALLDMKEPETPEKSPPQALVLQSEEEGGTESPGTESLRVGSSVGSPIVREGPEDGPDSTISEA
ATLPWGTDPHPSAPLPDPPGWRDIEPEPLESEAPTKSEEPFKEDANLLPEKTVRAFVPIDLQCIERKPQE
ERILHRDAGPGELRNFLPARLSHPEPPERKWAEAVVRPPGRSCGGCGSCGGREALRAVASVVAALIFFPC
LLYGAYAFLPFDAPRLPTMSSRLVYTLRCGVFATFPIVLGLLVYGLSLLCFSALRPFGEPRREVEIHRQY
VAQSVQLFILYFFNLAVLSTYLPQDTLKLLPLLTGLFAISRLIYWLTFAVGRSFRGFGYGLTFLPLLAML
VWNLYYMFVVEPERMLTASESRLDYPDHARSVSDYRPRSWG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH