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Report for CCDS17666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17666.1 Public Mus musculus 3 Hsd3b5 23 108 98 CCDS HistoryNCBI Gene:15496Re-query CCDS DB by CCDS ID:17666.1Re-query CCDS DB by GeneID:15496See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17666.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044094.5 ENSMUSP00000041442.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044094.5Link to Ensembl Protein Viewer:ENSMUSP00000041442.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000044094Re-query CCDS DB by Protein ID:ENSMUSP00000041442
Original member Current member NCBI NM_008295.2 NP_032321.2 Accepted alive Link to Nucleotide Sequence:NM_008295.2Link to Protein Sequence:NP_032321.2Re-query CCDS DB by Nucleotide ID:NM_008295Re-query CCDS DB by Protein ID:NP_032321Link to BLAST:NP_032321.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032321.2 373 Q61694 373 100% 0 0

Chromosomal Locations for CCDS 17666.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 98619007 98619818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98622003 98622167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98630054 98630198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGCCTGGATGGAGCTGCCTGGTGACAGGAGCAGGAGGGTTTCTTGGCCAGAGGATTGTCCGAATGTTGG
TGCAGGAGGAAGAGTTGCAGGAGATCAGAGCCCTGTTCAGGACCTTCGGTCGAAAACATGAAGAGGAATT
GTCCAAGCTGCAGACAAAGGCCAAGGTGAGAGTACTGAAGGGAGACATTCTGGATGCCCAATGCCTGAAG
AGAGCCTGCCAGGGCATGTCTGCTGTCATCCACACCGCTGCTGCTATTGACCCCCTTGGTGCCGCTTCCA
GACAGACCATCCTAGATGTCAATCTGAAAGGTACTCAGCTCCTACTGGATGCTTGTGTGGAAGCCAGTGT
GCCAACATTCATCTACAGCAGCTCAGTGCTTGTGGCTGGACCAAATTCCTACAAGGAGATCATCCTGAAT
GCCCATGAGGAAGAGCATCGTGAAAGCACATGGCCTAACCCATACCCATACAGCAAAAGGATGGCTGAGA
AGGCAGTGCTGGCAACAAATGGGAGACTCCTGAAAAATGGTGGCACTTTGCATACTTGTGCCTTAAGACT
CCCTTTCATCTATGGGGAAGAATGCCAAGTCACTTCAACCACTGTGAAAACAGCACTGAAGAACAACAGC
ATAATTAAGAAAAATGCCACATTCTCCATCGCCAACCCAGTGTATGTGGGCAATGCAGCCTGGGCTCACA
TTCTGGCTGCCAGGAGCCTACAGGACCCCAAGAAGTCCCCAAGCATCCAAGGACAGTTCTATTACATCTC
TGATAACACCCCTCACCAAAGCTATGATGATTTAAATTACACCCTGAGCAAGGAGTGGGGCCTCTGCCTT
GATTCTGGCTGGAGCCTTCCTCTGTCCCTGCTTTACTGGCTTGCCTTCCTGCTGGAAACTGTGAGCTTCC
TGCTACGTCCAGTTTACAACTATAGGCCACCCTTTAACCGCCTCTTGATCACAGTGCTAAATAGCGTGTT
TACCATTTCCTATAAGAAAGCTCAGCGCGATCTAGGCTATCAGCCACTTGTCAGCTGGGAGGAAGCCAAG
CAAAAAACCTCAGAGTGGATTGGAACACTAGTGAAGCAGCACAGGGAGACACTACACAAAAAGTCACAGT
GA

Translation (373 aa):
MPGWSCLVTGAGGFLGQRIVRMLVQEEELQEIRALFRTFGRKHEEELSKLQTKAKVRVLKGDILDAQCLK
RACQGMSAVIHTAAAIDPLGAASRQTILDVNLKGTQLLLDACVEASVPTFIYSSSVLVAGPNSYKEIILN
AHEEEHRESTWPNPYPYSKRMAEKAVLATNGRLLKNGGTLHTCALRLPFIYGEECQVTSTTVKTALKNNS
IIKKNATFSIANPVYVGNAAWAHILAARSLQDPKKSPSIQGQFYYISDNTPHQSYDDLNYTLSKEWGLCL
DSGWSLPLSLLYWLAFLLETVSFLLRPVYNYRPPFNRLLITVLNSVFTISYKKAQRDLGYQPLVSWEEAK
QKTSEWIGTLVKQHRETLHKKSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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